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This page was generated on 2021-10-15 15:05:49 -0400 (Fri, 15 Oct 2021).

CHECK results for PROcess on nebbiolo1

To the developers/maintainers of the PROcess package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PROcess.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1435/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PROcess 1.68.0  (landing page)
Xiaochun Li
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/PROcess
git_branch: RELEASE_3_13
git_last_commit: bbbacba
git_last_commit_date: 2021-05-19 11:34:07 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: PROcess
Version: 1.68.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:PROcess.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings PROcess_1.68.0.tar.gz
StartedAt: 2021-10-14 11:06:33 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 11:07:18 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 44.7 seconds
RetCode: 0
Status:   OK  
CheckDir: PROcess.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:PROcess.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings PROcess_1.68.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/PROcess.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PROcess/DESCRIPTION’ ... OK
* this is package ‘PROcess’ version ‘1.68.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘PROcess’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  ‘Icens’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
gelmap: warning in axis(1, at = at.mz, lab = at.mz, las = 2, lty = 0,
  cex.axis = 0.8): partial argument match of 'lab' to 'labels'
gelmap: warning in axis(2, at = at.col, lab = sampLab[at.col], las = 2,
  lty = 0, cex.axis = cexCol): partial argument match of 'lab' to
  'labels'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.13-bioc/meat/PROcess.Rcheck/00check.log’
for details.



Installation output

PROcess.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL PROcess
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘PROcess’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (PROcess)

Tests output


Example timings

PROcess.Rcheck/PROcess-Ex.timings

nameusersystemelapsed
aveSpec0.1610.0160.182
bslnoff0.3810.0060.386
getPeaks2.0830.0362.119
intg0.0010.0000.001
is.multiple0.0000.0010.001
isPeak1.6060.0171.624
peaks0.0410.0000.041
pk2bmkr2.0710.0122.084
quality2.7920.0602.851
renorm0.5830.0000.582
rmBaseline0.5870.0000.587
specZoom1.3250.0201.345