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This page was generated on 2021-10-15 15:06:47 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the PICS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PICS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1393/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
PICS 2.36.0 (landing page) Renan Sauteraud
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: PICS |
Version: 2.36.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PICS |
StartedAt: 2021-10-14 09:08:37 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 09:09:20 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 43.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL PICS ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘PICS’ ... ** using staged installation checking for pkg-config... /usr/local/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for GSL... yes configure: creating ./config.status config.status: creating src/Makevars ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c pics.c -o pics.o pics.c:1301:3: warning: variable 'penalty' is used uninitialized whenever switch default is taken [-Wsometimes-uninitialized] default: ^~~~~~~ pics.c:1307:97: note: uninitialized use occurs here bic = logDensityMix(yF, w, muF, sigmaSqF, K, NF) + logDensityMix(yR, w, muR, sigmaSqR, K,NR) - penalty; ^~~~~~~ pics.c:1275:42: note: initialize the variable 'penalty' to silence this warning double bic, tmp, muF[K], muR[K], penalty, distance; ^ = 0.0 pics.c:1633:76: warning: unused variable 'PhiRw' [-Wunused-variable] double aNormF, aNormR, bNormF, bNormR, P0F=1, P0R=1, PhiF, PhiR, PhiFw, PhiRw, wPjF, wPjR; ^ pics.c:1633:69: warning: unused variable 'PhiFw' [-Wunused-variable] double aNormF, aNormR, bNormF, bNormR, P0F=1, P0R=1, PhiF, PhiR, PhiFw, PhiRw, wPjF, wPjR; ^ pics.c:1889:7: warning: unused variable 'i' [-Wunused-variable] int i=0,j=0,k=0,l=0,kMerge=0,flag=0; ^ pics.c:1889:11: warning: unused variable 'j' [-Wunused-variable] int i=0,j=0,k=0,l=0,kMerge=0,flag=0; ^ 5 warnings generated. clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c segment.c -o segment.o segment.c:406:6: warning: variable 'pp' is incremented both in the loop header and in the loop body [-Wfor-loop-analysis] pp++; ^ segment.c:395:27: note: incremented here for (pp=start; pp<=p; pp++) { ^ segment.c:536:6: warning: variable 'pp' is incremented both in the loop header and in the loop body [-Wfor-loop-analysis] pp++; ^ segment.c:525:27: note: incremented here for (pp=start; pp<=p; pp++) { ^ segment.c:1489:11: warning: unused variable 'muFilter' [-Wunused-variable] double *muFilter, *deltaFilter, *sFFilter, *sRFilter, *seFilter, *seFilterF, *seFilterR, *scoreFilter, *score; ^ segment.c:1490:8: warning: unused variable 'filter1' [-Wunused-variable] SEXP filter1; ^ 4 warnings generated. clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o PICS.so pics.o segment.o -L/usr/local/lib -lgsl -lgslcblas -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.1/Resources/library/00LOCK-PICS/00new/PICS/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PICS)