| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:15 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the PDATK package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PDATK.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1363/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| PDATK 1.0.2 (landing page) Benjamin Haibe-Kains
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: PDATK |
| Version: 1.0.2 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/PDATK_1.0.2.tar.gz && rm -rf PDATK.buildbin-libdir && mkdir PDATK.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PDATK.buildbin-libdir PDATK_1.0.2.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PDATK_1.0.2.zip && rm PDATK_1.0.2.tar.gz PDATK_1.0.2.zip |
| StartedAt: 2021-10-14 11:23:16 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:25:11 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 114.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/PDATK_1.0.2.tar.gz && rm -rf PDATK.buildbin-libdir && mkdir PDATK.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=PDATK.buildbin-libdir PDATK_1.0.2.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL PDATK_1.0.2.zip && rm PDATK_1.0.2.tar.gz PDATK_1.0.2.zip
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install for i386
* installing *source* package 'PDATK' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'PDATK'
finding HTML links ... done
CSPC_MAE html
ClinicalModel-class html
ClinicalModel html
CohortList-class html
CohortList html
ConsensusMetaclusteringModel-class html
ConsensusMetaclusteringModel html
CoxModel-class html
CoxModel html
GeneFuModel-class html
GeneFuModel html
ModelComparison-class html
ModelComparison html
NCSModel-class html
NetworkCommunitySearchModel html
PCOSP-class html
PCOSP html
PCOSP_or_ClinicalModel-class html
PCOSP_or_RLS_or_RGA-class html
RGAModel-class html
RLSModel-class html
RandomGeneAssignmentModel html
RandomLabelShufflingModel html
S4Model-class html
SurvivalExperiment-class html
SurvivalExperiment html
SurvivalModel-class html
SurvivalModel html
assignColDataColumn html
assignSubtypes-CohortList-list-method html
assignSubtypes-SurvivalExperiment-data.frame-method
html
assignSubtypes html
barPlotModelComparison-ClinicalModel-PCOSP_or_RLS_or_RGA-method
html
barPlotModelComparison html
birnbaum html
chen html
cohortSubtypeDFs html
compareModels-ModelComparison-SurvivalModel-method
html
compareModels-SurvivalModel-SurvivalModel-method
html
compareModels html
densityPlotModelComparison-PCOSP_or_RLS_or_RGA-PCOSP_or_RLS_or_RGA-method
html
densityPlotModelComparison html
dot-findAllCohortPairs html
dot-randomSampleIndex html
dropNotCensored-CohortList-method html
dropNotCensored-SurvivalExperiment-method
html
dropNotCensored html
findCommonGenes-CohortList-method html
findCommonGenes-MultiAssayExperiment-method
html
findCommonGenes html
findCommonSamples-CohortList-method html
findCommonSamples html
forestPlot-ModelComparison-method html
forestPlot-PCOSP_or_ClinicalModel-method
html
forestPlot html
getModelSeed-SurvivalModel-method html
getModelSeed html
getTopFeatures-MultiAssayExperiment-method
html
getTopFeatures-PCOSP-method html
getTopFeatures-SummarizedExperiment-method
html
getTopFeatures html
haiderSigScores html
hasColDataColumns html
merge-SurvivalExperiment-SurvivalExperiment-method
html
modelParams-S4Model-method html
modelParams-set-S4Model-List_or_list_or_NULL-method
html
modelParams-set html
modelParams html
models-S4Model-method html
models-SurvivalModel-method html
models-set-S4Model-List_or_list_or_NULL-method
html
models-set-SurvivalModel-SimpleList-method
html
models-set html
models html
normalize-DFrame-method html
normalize-MultiAssayExperiment-method html
normalize-SummarizedExperiment-method html
normalize-data.frame_or_matrix-method html
normalsMAE html
plotNetworkGraph-NCSModel-method html
plotNetworkGraph html
plotROC-PCOSP-method html
plotROC html
plotSurvivalCurves-CoxModel-method html
plotSurvivalCurves html
predictClasses-CohortList-ClinicalModel-method
html
predictClasses-CohortList-GeneFuModel-method
html
predictClasses-CohortList-PCOSP_or_RLS_or_RGA-method
html
predictClasses-ConsensusMetaclusteringModel-ANY-method
html
predictClasses-NCSModel-ANY-method html
predictClasses-SurvivalExperiment-ClinicalModel-method
html
predictClasses-SurvivalExperiment-GeneFuModel-method
html
predictClasses-SurvivalExperiment-PCOSP_or_RLS_or_RGA-method
html
predictClasses html
preprocessCaret html
rankFeatures-MultiAssayExperiment-method
html
rankFeatures-SummarizedExperiment-method
html
rankFeatures html
removeColDataFactorColumns html
removeFactorColumns html
renameColDataColumns html
renameColumns html
runGSEA-PCOSP-data.frame-method html
runGSEA html
sampleClinicalModel html
sampleCohortList html
sampleICGCmicro html
samplePCOSPmodel html
samplePCOSPpredList html
samplePCSIsurvExp html
sampleRGAmodel html
sampleRLSmodel html
sampleTrainedPCOSPmodel html
sampleValPCOSPmodel html
show-S4Model-method html
subset-CohortList-method html
trainData-S4Model-method html
trainData-set-S4Model-method html
trainData-set html
trainData html
trainModel-ClinicalModel-method html
trainModel-ConsensusMetaclusteringModel-method
html
trainModel-CoxModel-method html
trainModel-GeneFuModel-method html
trainModel-NCSModel-method html
trainModel-PCOSP-method html
trainModel-RGAModel-method html
trainModel-RLSModel-method html
trainModel html
validateModel-ClinicalModel-CohortList-method
html
validateModel-ClinicalModel-SurvivalExperiment-method
html
validateModel-ConsensusMetaclusteringModel-ConsensusMetaclusteringModel-method
html
validateModel-GeneFuModel-CohortList-method
html
validateModel-GeneFuModel-SurvivalExperiment-method
html
validateModel-PCOSP_or_RLS_or_RGA-CohortList-method
html
validateModel-PCOSP_or_RLS_or_RGA-SurvivalExperiment-method
html
validateModel html
validationData-S4Model-method html
validationData-SurvivalModel-method html
validationData-set-S4Model-List_or_list_or_NULL-method
html
validationData-set-SurvivalModel-CohortList-method
html
validationData-set html
validationData html
validationStats-S4Model-method html
validationStats-SurvivalModel-method html
validationStats-set-S4Model-DFrame_or_data.frame_data.table_or_NULL-method
html
validationStats-set-SurvivalModel-data.frame-method
html
validationStats-set html
validationStats html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'PDATK' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PDATK' as PDATK_1.0.2.zip
* DONE (PDATK)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'PDATK' successfully unpacked and MD5 sums checked