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This page was generated on 2021-10-15 15:06:15 -0400 (Fri, 15 Oct 2021).

INSTALL results for OrganismDbi on tokay2

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raw results

Package 1325/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OrganismDbi 1.34.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/OrganismDbi
git_branch: RELEASE_3_13
git_last_commit: 253c4ae
git_last_commit_date: 2021-05-19 11:53:46 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: OrganismDbi
Version: 1.34.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/OrganismDbi_1.34.0.tar.gz && rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OrganismDbi.buildbin-libdir OrganismDbi_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL OrganismDbi_1.34.0.zip && rm OrganismDbi_1.34.0.tar.gz OrganismDbi_1.34.0.zip
StartedAt: 2021-10-14 10:17:16 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 10:18:13 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 56.8 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/OrganismDbi_1.34.0.tar.gz && rm -rf OrganismDbi.buildbin-libdir && mkdir OrganismDbi.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OrganismDbi.buildbin-libdir OrganismDbi_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL OrganismDbi_1.34.0.zip && rm OrganismDbi_1.34.0.tar.gz OrganismDbi_1.34.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 58448  100 58448    0     0   371k      0 --:--:-- --:--:-- --:--:--  373k

install for i386

* installing *source* package 'OrganismDbi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'OrganismDbi'
    finding HTML links ... done
    OrganismDb                              html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/RtmpKos4O9/R.INSTALL273065684e63/OrganismDbi/man/OrganismDb.Rd:191: missing link 'GenomeInfoDb'
    coordinate-mapping-method               html  
    makeOrganismDbFromBiomart               html  
    makeOrganismDbFromTxDb                  html  
    makeOrganismDbFromUCSC                  html  
    makeOrganismPackage                     html  
    rangeBasedAccessors                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'OrganismDbi' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OrganismDbi' as OrganismDbi_1.34.0.zip
* DONE (OrganismDbi)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'OrganismDbi' successfully unpacked and MD5 sums checked