Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:45 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the OpenStats package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OpenStats.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1315/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
OpenStats 1.4.0 (landing page) Hamed Haseli Mashhadi
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: OpenStats |
Version: 1.4.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings OpenStats_1.4.0.tar.gz |
StartedAt: 2021-10-14 21:57:32 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 22:01:53 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 261.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OpenStats.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:OpenStats.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings OpenStats_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/OpenStats.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘OpenStats/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘OpenStats’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘OpenStats’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.13-bioc/meat/OpenStats.Rcheck/00check.log’ for details.
OpenStats.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL OpenStats ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘OpenStats’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OpenStats)
OpenStats.Rcheck/OpenStats-Ex.timings
name | user | system | elapsed | |
OpenStatsAnalysis | 3.398 | 0.108 | 3.517 | |
OpenStatsBuilder | 0.000 | 0.000 | 0.001 | |
OpenStatsComplementarySplit | 2.554 | 0.037 | 2.593 | |
OpenStatsList | 2.850 | 0.590 | 3.449 | |
OpenStatsReport | 3.631 | 0.428 | 4.021 | |
plot.OpenStats | 0.731 | 0.094 | 0.817 | |
plot.OpenStatsComplementarySplit | 2.779 | 0.373 | 3.136 | |
plot.OpenStatsFE | 0.123 | 0.012 | 0.136 | |
plot.OpenStatsMM | 0.985 | 0.118 | 1.090 | |
plot.OpenStatsRR | 0.484 | 0.055 | 0.534 | |
print.OpenStats | 0.648 | 0.082 | 0.725 | |
print.OpenStatsComplementarySplit | 2.928 | 0.367 | 3.274 | |
print.OpenStatsFE | 0.125 | 0.015 | 0.139 | |
print.OpenStatsMM | 1.102 | 0.116 | 1.205 | |
print.OpenStatsRR | 0.542 | 0.057 | 0.593 | |
summary.OpenStats | 0.816 | 0.085 | 0.893 | |
summary.OpenStatsComplementarySplit | 2.850 | 0.343 | 3.159 | |
summary.OpenStatsFE | 0.116 | 0.012 | 0.127 | |
summary.OpenStatsMM | 1.031 | 0.125 | 1.143 | |
summary.OpenStatsRR | 0.450 | 0.054 | 0.499 | |