Matthias Futschik
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/OLIN |
| git_branch: RELEASE_3_13 |
| git_last_commit: 2be671b |
| git_last_commit_date: 2021-05-19 11:34:40 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:14 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the OLIN package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OLIN.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1293/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OLIN 1.70.0 (landing page) Matthias Futschik
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: OLIN |
| Version: 1.70.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:OLIN.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings OLIN_1.70.0.tar.gz |
| StartedAt: 2021-10-15 02:50:51 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 02:52:31 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 100.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OLIN.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:OLIN.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings OLIN_1.70.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/OLIN.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'OLIN/DESCRIPTION' ... OK
* this is package 'OLIN' version '1.70.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OLIN' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
'marray' 'methods'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'convert' in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: 'locfit'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ino: no visible global function definition for 'locfit'
ino: no visible global function definition for 'predict'
lin: no visible global function definition for 'locfit'
lin: no visible global function definition for 'predict'
oin: no visible global function definition for 'gcvplot'
oin: no visible global function definition for 'locfit'
oin: no visible global function definition for 'predict'
olin: no visible global function definition for 'gcv'
olin: no visible global function definition for 'locfit'
olin: no visible global function definition for 'predict'
Undefined global functions or variables:
gcv gcvplot locfit predict
Consider adding
importFrom("stats", "predict")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
olin 15.58 0.01 15.6
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
olin 17.28 0.02 17.3
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.13-bioc/meat/OLIN.Rcheck/00check.log'
for details.
OLIN.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/OLIN_1.70.0.tar.gz && rm -rf OLIN.buildbin-libdir && mkdir OLIN.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OLIN.buildbin-libdir OLIN_1.70.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL OLIN_1.70.0.zip && rm OLIN_1.70.0.tar.gz OLIN_1.70.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 563k 100 563k 0 0 1866k 0 --:--:-- --:--:-- --:--:-- 1873k
install for i386
* installing *source* package 'OLIN' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'OLIN'
finding HTML links ... done
anovaint html
anovapin html
anovaplate html
anovaspatial html
backgroundCorrect2 html
bas html
colorbar.mxy html
colorbar.mxy.abs html
colorbar.sig html
fdr.int html
fdr.int2 html
fdr.spatial html
fdr.spatial2 html
fgbg.visu html
ino html
lin html
m2v html
ma.matrix html
ma.vector html
mxy.abs.plot html
mxy.plot html
mxy2.plot html
oin html
olin html
p.int html
p.int2 html
p.spatial html
p.spatial2 html
sig.mask html
sigint.plot html
sigint.plot2 html
sigxy.plot html
sigxy.plot2 html
sw html
sw.olin html
sw.xy html
v2m html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'OLIN' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OLIN' as OLIN_1.70.0.zip
* DONE (OLIN)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'OLIN' successfully unpacked and MD5 sums checked
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OLIN.Rcheck/examples_i386/OLIN-Ex.timings
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OLIN.Rcheck/examples_x64/OLIN-Ex.timings
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