Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:47 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the OCplus package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OCplus.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1289/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
OCplus 1.66.0 (landing page) Alexander Ploner
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: OCplus |
Version: 1.66.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:OCplus.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings OCplus_1.66.0.tar.gz |
StartedAt: 2021-10-14 10:50:48 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 10:51:51 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 63.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: OCplus.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:OCplus.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings OCplus_1.66.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/OCplus.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘OCplus/DESCRIPTION’ ... OK * this is package ‘OCplus’ version ‘1.66.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘OCplus’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... NOTE Found the following apparent S3 methods exported but not registered: plot.FDR.result plot.fdr1d.result plot.fdr2d.result summary.fdr.result See section ‘Registering S3 methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.13-bioc/meat/OCplus.Rcheck/00check.log’ for details.
OCplus.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL OCplus ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘OCplus’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OCplus)
OCplus.Rcheck/OCplus-Ex.timings
name | user | system | elapsed | |
EOC | 0.245 | 0.024 | 0.269 | |
FDR | 0.000 | 0.002 | 0.002 | |
MAsim.smyth | 1.210 | 0.024 | 1.234 | |
OCshow | 0.793 | 0.024 | 0.817 | |
TOC | 0.189 | 0.027 | 0.215 | |
average.fdr | 1.247 | 0.012 | 1.260 | |
fdr1d | 0.521 | 0.004 | 0.525 | |
fdr2d | 0.335 | 0.008 | 0.343 | |
plot.FDR.result | 1.074 | 0.024 | 1.100 | |
plot.fdr1d.result | 0.877 | 0.004 | 0.881 | |
plot.fdr2d.result | 1.184 | 0.016 | 1.201 | |
samplesize | 3.761 | 0.564 | 4.324 | |
smooth1d | 0.016 | 0.016 | 0.032 | |
summary.fdr.result | 0.684 | 0.000 | 0.684 | |
tMixture | 1.732 | 0.468 | 2.201 | |