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This page was generated on 2021-10-15 15:06:14 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the NormalyzerDE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NormalyzerDE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1278/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
NormalyzerDE 1.10.0 (landing page) Jakob Willforss
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: NormalyzerDE |
Version: 1.10.0 |
Command: rm -rf NormalyzerDE.buildbin-libdir && mkdir NormalyzerDE.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NormalyzerDE.buildbin-libdir NormalyzerDE_1.10.0.tar.gz |
StartedAt: 2021-10-15 10:43:32 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 10:44:38 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 66.2 seconds |
RetCode: 0 |
Status: OK |
PackageFile: NormalyzerDE_1.10.0.zip |
PackageFileSize: 1.481 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf NormalyzerDE.buildbin-libdir && mkdir NormalyzerDE.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=NormalyzerDE.buildbin-libdir NormalyzerDE_1.10.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'NormalyzerDE' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'NormalyzerDE' finding HTML links ... done NormalyzerDataset html NormalyzerEvaluationResults html NormalyzerResults html NormalyzerStatistics html analyzeNormalizations html calculateANOVAPValues html calculateAvgMadMem html calculateAvgReplicateVariation html calculateContrasts html calculateCorrSum html calculateFeatureCV html calculatePercentageAvgDiffInMat html calculateReplicateCV html calculateSummarizedCorrelationVector html createDirectory html detectSingleReplicate html detectSingletonSample html elapsedSecondsBetweenSystimes html example_data html example_data_only_values html example_design html example_stat_data html example_stat_summarized_experiment html example_summarized_experiment html example_wide_data html example_wide_design html filterLowRep html findLowlyVariableFeaturesCVs html generateAnnotatedMatrix html generatePlots html generateStatsReport html getCombinedMatrix html getIndexList html getLowCountSampleFiltered html getRTNormalizedMatrix html getReplicateSortedData html getRowNAFilterContrast html getSmoothedRTNormalizedMatrix html getVerifiedNormalyzerObject html getWidenedRTRange html globalIntensityNormalization html loadData html loadDesign html loadRawDataFromFile html meanNormalization html medianNormalization html normMethods html normalyzer html normalyzerDE html performCyclicLoessNormalization html performGlobalRLRNormalization html performNoNormalization html performNormalizations html performQuantileNormalization html performSMADNormalization html performVSNNormalization html plotBoxPlot html plotCVvsIntensity html plotComparisonVenns html plotContrastPCA html plotContrastPHists html plotCorrelation html plotDendrograms html plotDensity html plotFrontPage html plotMA html plotMDS html plotMeanSD html plotPHist html plotQQ html plotRLE html plotReplicateVarAndStableVariables html plotReplicateVariance html plotSampleMappingPage html plotSampleOutlierSummary html plotScatter html plotSigScatter html preprocessData html printMeta html printPlots html reduceTechnicalReplicates html setupJobDir html setupPlotting html setupRawContrastObject html setupRawDataObject html setupTestData html validateSampleReplication html verifyContrasts html verifyDesignMatrix html verifyMultipleSamplesPresent html verifySummarizedExperiment html verifyValidNumbers html writeNormalizedDatasets html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'NormalyzerDE' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'NormalyzerDE' as NormalyzerDE_1.10.0.zip * DONE (NormalyzerDE)