Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:47 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the NoRCE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NoRCE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1276/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
NoRCE 1.4.0 (landing page) Gulden Olgun
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | ERROR | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: NoRCE |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:NoRCE.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings NoRCE_1.4.0.tar.gz |
StartedAt: 2021-10-14 10:49:52 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 10:57:23 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 450.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: NoRCE.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:NoRCE.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings NoRCE_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/NoRCE.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘NoRCE/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘NoRCE’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘NoRCE’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed KeggEnrichment 14.754 1.481 61.463 genePathwayEnricher 12.953 0.227 17.453 assembly 11.872 0.548 61.841 mirnaGOEnricher 7.661 0.164 7.908 writeEnrichment 5.748 0.212 6.063 calculateCorr 5.001 0.099 5.099 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
NoRCE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL NoRCE ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘NoRCE’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NoRCE)
NoRCE.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(NoRCE) > > test_check("NoRCE") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] > > proc.time() user system elapsed 22.273 1.018 24.576
NoRCE.Rcheck/NoRCE-Ex.timings
name | user | system | elapsed | |
KeggEnrichment | 14.754 | 1.481 | 61.463 | |
WikiEnrichment | 3.436 | 0.088 | 4.772 | |
assembly | 11.872 | 0.548 | 61.841 | |
brain_disorder_ncRNA | 0.003 | 0.000 | 0.002 | |
brain_mirna | 0.001 | 0.000 | 0.001 | |
breastmRNA | 0.001 | 0.000 | 0.001 | |
calculateCorr | 5.001 | 0.099 | 5.099 | |
convertGeneID | 0.629 | 0.012 | 0.641 | |
extractBiotype | 0.195 | 0.016 | 0.211 | |
filterBiotype | 0.065 | 0.000 | 0.065 | |
geneGOEnricher | 4.714 | 0.252 | 4.967 | |
genePathwayEnricher | 12.953 | 0.227 | 17.453 | |
geneRegionGOEnricher | 3.255 | 0.116 | 3.373 | |
geneRegionPathwayEnricher | 0.606 | 0.016 | 1.529 | |
getGoDag | 2.766 | 0.084 | 3.414 | |
getKeggDiagram | 3.129 | 0.048 | 3.555 | |
getNearToExon | 1.328 | 0.035 | 1.562 | |
getNearToIntron | 1.231 | 0.021 | 1.250 | |
getReactomeDiagram | 4.445 | 0.203 | 4.648 | |
getTADOverlap | 0.093 | 0.005 | 0.097 | |
getUCSC | 0.146 | 0.000 | 0.146 | |
goEnrichment | 1.941 | 0.063 | 2.006 | |
listTAD | 0.002 | 0.004 | 0.006 | |
mirna | 0.001 | 0.000 | 0.001 | |
mirnaGOEnricher | 7.661 | 0.164 | 7.908 | |
mirnaPathwayEnricher | 2.688 | 0.031 | 3.112 | |
mirnaRegionGOEnricher | 3.865 | 0.100 | 3.968 | |
mirnaRegionPathwayEnricher | 0.409 | 0.004 | 0.800 | |
mrna | 0.002 | 0.000 | 0.001 | |
ncRegion | 0.001 | 0.000 | 0.001 | |
predictmiTargets | 1.290 | 0.004 | 1.775 | |
reactomeEnrichment | 3.144 | 0.040 | 3.185 | |
setParameters | 0.001 | 0.000 | 0.001 | |
tad_dmel | 0.001 | 0.000 | 0.002 | |
tad_hg19 | 0.000 | 0.001 | 0.001 | |
tad_hg38 | 0.000 | 0.001 | 0.001 | |
tad_mm10 | 0.001 | 0.000 | 0.001 | |
writeEnrichment | 5.748 | 0.212 | 6.063 | |