Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:13 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the MungeSumstats package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MungeSumstats.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1232/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MungeSumstats 1.0.1 (landing page) Alan Murphy
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: MungeSumstats |
Version: 1.0.1 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/MungeSumstats_1.0.1.tar.gz && rm -rf MungeSumstats.buildbin-libdir && mkdir MungeSumstats.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MungeSumstats.buildbin-libdir MungeSumstats_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MungeSumstats_1.0.1.zip && rm MungeSumstats_1.0.1.tar.gz MungeSumstats_1.0.1.zip |
StartedAt: 2021-10-14 10:27:46 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 10:28:39 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 52.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/MungeSumstats_1.0.1.tar.gz && rm -rf MungeSumstats.buildbin-libdir && mkdir MungeSumstats.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MungeSumstats.buildbin-libdir MungeSumstats_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL MungeSumstats_1.0.1.zip && rm MungeSumstats_1.0.1.tar.gz MungeSumstats_1.0.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 89684 100 89684 0 0 560k 0 --:--:-- --:--:-- --:--:-- 565k install for i386 * installing *source* package 'MungeSumstats' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'MungeSumstats' finding HTML links ... done check_allele_flip html check_allele_merge html check_bi_allelic html check_chr html check_col_order html check_dup_bp html check_dup_col html check_dup_snp html check_four_step_col html check_info_score html check_miss_data html check_multi_gwas html check_n_int html check_n_num html check_no_allele html check_no_chr_bp html check_no_rs_snp html check_no_snp html check_on_ref_genome html check_row_snp html check_signed_col html check_small_p_val html check_strand_ambiguous html check_tab_delimited html check_two_step_col html check_vcf html check_vital_col html format_sumstats html load_ref_genome_data html load_snp_loc_data html raw_ALSvcf html raw_eduAttainOkbay html standardise_sumstats_column_headers_crossplatform html sumstatsColHeaders html validate_parameters html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MungeSumstats' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'MungeSumstats' as MungeSumstats_1.0.1.zip * DONE (MungeSumstats) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'MungeSumstats' successfully unpacked and MD5 sums checked