Claudio Isella
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/Mulcom |
| git_branch: RELEASE_3_13 |
| git_last_commit: d21dc82 |
| git_last_commit_date: 2021-05-19 11:46:14 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:13 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the Mulcom package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Mulcom.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1217/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Mulcom 1.42.0 (landing page) Claudio Isella
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: Mulcom |
| Version: 1.42.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Mulcom_1.42.0.tar.gz && rm -rf Mulcom.buildbin-libdir && mkdir Mulcom.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Mulcom.buildbin-libdir Mulcom_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Mulcom_1.42.0.zip && rm Mulcom_1.42.0.tar.gz Mulcom_1.42.0.zip |
| StartedAt: 2021-10-14 08:30:32 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 08:31:28 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 55.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/Mulcom_1.42.0.tar.gz && rm -rf Mulcom.buildbin-libdir && mkdir Mulcom.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Mulcom.buildbin-libdir Mulcom_1.42.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL Mulcom_1.42.0.zip && rm Mulcom_1.42.0.tar.gz Mulcom_1.42.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1119k 100 1119k 0 0 1788k 0 --:--:-- --:--:-- --:--:-- 1791k
install for i386
* installing *source* package 'Mulcom' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mulLibs.cc -o mulLibs.o
mulLibs.cc: In function 'void Single_SimulationC(double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:708:33: warning: statement has no effect [-Wunused-value]
current_cluster ;
^
mulLibs.cc: In function 'void Complete_SimulationC(double*, int*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:1022:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for ( int i = 0 ; i < sss2.size() ; i++ ) {
~~^~~~~~~~~~~~~
mulLibs.cc:1023:46: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'unsigned int'} [-Wsign-compare]
for ( int j = 0 ; j < harmonic_means.size() ; j++ ) {
~~^~~~~~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Mulcom.dll tmp.def mulLibs.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/Mulcom.buildbin-libdir/00LOCK-Mulcom/00new/Mulcom/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Mulcom'
finding HTML links ... done
Affy html
AffyIlmn html
Illumina html
Ilmn html
MULCOM-class html
MULCOM_P html
harmonicMean html
limmaAffySymbols html
limmaIlmnSymbols html
mulCAND html
mulCalc html
mulDELTA html
mulDiff html
mulFSG html
mulIndex html
mulInt html
mulMSE html
mulOpt html
mulOptPars html
mulOptPlot html
mulParOpt html
mulPerm html
mulPermC html
mulSSE html
mulScores html
mulcomGeneListIlmn html
samAffySymbols html
samIlmnSymbols html
samOptPars html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'Mulcom' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mulLibs.cc -o mulLibs.o
mulLibs.cc: In function 'void Single_SimulationC(double*, double*, double*, double*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:708:33: warning: statement has no effect [-Wunused-value]
current_cluster ;
^
mulLibs.cc: In function 'void Complete_SimulationC(double*, int*, double*, double*, int*, int*, int*, int*, int*)':
mulLibs.cc:1022:38: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for ( int i = 0 ; i < sss2.size() ; i++ ) {
~~^~~~~~~~~~~~~
mulLibs.cc:1023:46: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<double>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
for ( int j = 0 ; j < harmonic_means.size() ; j++ ) {
~~^~~~~~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o Mulcom.dll tmp.def mulLibs.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/Mulcom.buildbin-libdir/Mulcom/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Mulcom' as Mulcom_1.42.0.zip
* DONE (Mulcom)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'Mulcom' successfully unpacked and MD5 sums checked