Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:12 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the MinimumDistance package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MinimumDistance.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1141/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MinimumDistance 1.36.0 (landing page) Robert Scharpf
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: MinimumDistance |
Version: 1.36.0 |
Command: rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MinimumDistance.buildbin-libdir MinimumDistance_1.36.0.tar.gz |
StartedAt: 2021-10-15 10:25:35 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 10:27:08 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 93.6 seconds |
RetCode: 0 |
Status: OK |
PackageFile: MinimumDistance_1.36.0.zip |
PackageFileSize: 3.663 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MinimumDistance.buildbin-libdir && mkdir MinimumDistance.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MinimumDistance.buildbin-libdir MinimumDistance_1.36.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'MinimumDistance' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm' Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance' Creating a new generic function for 'allNames' in package 'MinimumDistance' in method for 'coerce' with signature '"RangedDataCNV","GRanges"': no definition for class "RangedDataCNV" in method for 'todf' with signature 'object="TrioSet",rangeData="RangedData"': no definition for class "RangedData" in method for 'prune' with signature 'object="TrioSet",ranges="RangedDataCNV"': no definition for class "RangedDataCNV" in method for 'prune' with signature 'object="TrioSetList",ranges="RangedDataCNV"': no definition for class "RangedDataCNV" ** help *** installing help indices converting help for package 'MinimumDistance' finding HTML links ... done DNAcopyParam html Defunct html Deprecated html FilterParamMD-class html FilterParamMD html MAP html MAP2 html MDRanges-class html MinDistExperiment-class html MinDistExperiment html MinDistGRanges-class html MinDistGRanges html MinDistParam-class html MinDistParam html MinDistPosterior-class html MinimumDistance html ParentOffspring-class html ParentOffspringList-class html Pedigree-class html Pedigree html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/MinimumDistance.buildbin-libdir/00LOCK-MinimumDistance/00new/MinimumDistance/help/Pedigree.html PennParam html TrioSet-class html TrioSet html TrioSetList-class html TrioSetList html TrioSetListLD html acf2 html calculateMindist html coercion-methods html denovo html exampleTrioSetList html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/MinimumDistance.buildbin-libdir/00LOCK-MinimumDistance/00new/MinimumDistance/help/trioSetList.html filterExperiment html mad2 html mdLegend html md_exp html md_gr html mindist html nMAD html pedigreeGrid html pedigreeName html pedigreeViewports html plotDenovo html range-ILimit-method html segment2 html finding level-2 HTML links ... done ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm' Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance' ** testing if installed package can be loaded from final location No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm' Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'MinimumDistance' ... ** testing if installed package can be loaded No methods found in package 'oligoClasses' for request: 'mean' when loading 'crlmm' Warning: replacing previous import 'ff::pattern' by 'grid::pattern' when loading 'MinimumDistance' * MD5 sums packaged installation of 'MinimumDistance' as MinimumDistance_1.36.0.zip * DONE (MinimumDistance)