Back to Multiple platform build/check report for BioC 3.13
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

This page was generated on 2021-10-15 15:06:42 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for MIMOSA on machv2

To the developers/maintainers of the MIMOSA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MIMOSA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1136/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MIMOSA 1.30.0  (landing page)
Greg Finak
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/MIMOSA
git_branch: RELEASE_3_13
git_last_commit: 8910727
git_last_commit_date: 2021-05-19 12:02:48 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: MIMOSA
Version: 1.30.0
Command: rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MIMOSA_1.30.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R MIMOSA.buildbin-libdir
StartedAt: 2021-10-15 03:06:50 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 03:08:02 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 71.5 seconds
RetCode: 0
Status:   OK  
PackageFile: MIMOSA_1.30.0.tgz
PackageFileSize: 601.1 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MIMOSA.buildbin-libdir && mkdir MIMOSA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MIMOSA_1.30.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R MIMOSA.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=MIMOSA.buildbin-libdir MIMOSA_1.30.0.tar.gz'
>>>>>>> 

* installing *source* package ‘MIMOSA’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I/usr/local/include  `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"`   -fPIC  -Wall -g -O2  -c BetaMix.cpp -o BetaMix.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I/usr/local/include  `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"`   -fPIC  -Wall -g -O2  -c MCMC.cpp -o MCMC.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c MIMOSA_init.c -o MIMOSA_init.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c betaintegral.c -o betaintegral.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include' -I/usr/local/include  `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "RcppArmadillo:::CxxFlags()"`   -fPIC  -Wall -g -O2  -c betaintegralRcpp.cpp -o betaintegralRcpp.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MIMOSA.so BetaMix.o MCMC.o MIMOSA_init.o betaintegral.o betaintegralRcpp.o -O3 -lm -lstdc++ -I"/Library/Frameworks/R.framework/Versions/4.1/Resources/library/RcppArmadillo/include" -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/MIMOSA.buildbin-libdir/00LOCK-MIMOSA/00new/MIMOSA/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MIMOSA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR MIMOSA.buildbin-libdir/MIMOSA/libs/MIMOSA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs/MIMOSA.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs/MIMOSA.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "MIMOSA.buildbin-libdir/MIMOSA/libs/MIMOSA.so"