Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:41 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the MCbiclust package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MCbiclust.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1054/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MCbiclust 1.16.0 (landing page) Robert Bentham
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: MCbiclust |
Version: 1.16.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:MCbiclust.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings MCbiclust_1.16.0.tar.gz |
StartedAt: 2021-10-14 20:43:44 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 20:51:42 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 478.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MCbiclust.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:MCbiclust.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings MCbiclust_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/MCbiclust.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MCbiclust/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MCbiclust’ version ‘1.16.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MCbiclust’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed SilhouetteClustGroups 46.537 1.519 48.632 CVPlot 22.010 0.794 22.850 PointScoreCalc 21.694 0.609 22.863 CVEval 16.599 0.484 17.618 PC1VecFun 15.829 0.471 16.813 ThresholdBic 15.829 0.368 16.690 SampleSort 14.385 0.403 15.325 GOEnrichmentAnalysis 8.949 0.320 9.279 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.13-bioc/meat/MCbiclust.Rcheck/00check.log’ for details.
MCbiclust.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL MCbiclust ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘MCbiclust’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MCbiclust)
MCbiclust.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > Sys.setenv("R_TESTS" = "") > > library(testthat) > library(MCbiclust) > > test_check("MCbiclust") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ] > > proc.time() user system elapsed 111.233 4.745 116.609
MCbiclust.Rcheck/MCbiclust-Ex.timings
name | user | system | elapsed | |
CVEval | 16.599 | 0.484 | 17.618 | |
CVPlot | 22.010 | 0.794 | 22.850 | |
CorScoreCalc | 3.716 | 0.220 | 3.940 | |
FindSeed | 3.494 | 0.221 | 3.716 | |
GOEnrichmentAnalysis | 8.949 | 0.320 | 9.279 | |
HclustGenesHiCor | 3.389 | 0.249 | 3.640 | |
PC1VecFun | 15.829 | 0.471 | 16.813 | |
PointScoreCalc | 21.694 | 0.609 | 22.863 | |
SampleSort | 14.385 | 0.403 | 15.325 | |
SilhouetteClustGroups | 46.537 | 1.519 | 48.632 | |
ThresholdBic | 15.829 | 0.368 | 16.690 | |