Tallulah Andrews
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/M3Drop |
| git_branch: RELEASE_3_13 |
| git_last_commit: e393b5a |
| git_last_commit_date: 2021-05-19 12:24:06 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:10 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the M3Drop package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/M3Drop.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1011/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| M3Drop 1.18.0 (landing page) Tallulah Andrews
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: M3Drop |
| Version: 1.18.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:M3Drop.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings M3Drop_1.18.0.tar.gz |
| StartedAt: 2021-10-15 01:15:08 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 01:26:25 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 677.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: M3Drop.Rcheck |
| Warnings: 1 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:M3Drop.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings M3Drop_1.18.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/M3Drop.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'M3Drop/DESCRIPTION' ... OK
* this is package 'M3Drop' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'M3Drop' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... WARNING
Package in Depends field not imported from: 'numDeriv'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Missing or unexported object: 'scater::exprs'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
M3DropConvertData: no visible global function definition for 'assays'
NBumiConvertData: no visible global function definition for 'assays'
bg__filter_cells: no visible binding for global variable 'x'
bg__get_extreme_residuals: no visible binding for global variable 'x'
Undefined global functions or variables:
assays x
* checking Rd files ... NOTE
prepare_Rd: NBumi_FSOther.Rd:8-10: Dropping empty section \usage
prepare_Rd: NBumi_TradDE.Rd:7-8: Dropping empty section \usage
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
NewSimulations 129.22 1.87 131.10
Imputation 74.28 0.13 74.40
M3D_getmarkers 35.61 0.26 35.87
M3D_ConverData 6.16 0.47 6.63
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
NewSimulations 137.04 0.75 137.79
Imputation 77.28 0.07 77.34
M3D_getmarkers 35.73 0.06 35.80
M3D_ConverData 6.53 0.28 6.81
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.13-bioc/meat/M3Drop.Rcheck/00check.log'
for details.
M3Drop.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/M3Drop_1.18.0.tar.gz && rm -rf M3Drop.buildbin-libdir && mkdir M3Drop.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=M3Drop.buildbin-libdir M3Drop_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL M3Drop_1.18.0.zip && rm M3Drop_1.18.0.tar.gz M3Drop_1.18.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 55825 100 55825 0 0 314k 0 --:--:-- --:--:-- --:--:-- 316k
install for i386
* installing *source* package 'M3Drop' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'M3Drop'
finding HTML links ... done
Brennecke_getVariableGenes html
Consensus_FS html
Fitting_Dropout_Models html
Imputation html
M3D_Clean_Data html
M3D_ConverData html
M3D_Differential_Expression html
M3D_Dropout_Models html
M3D_Expression_Heatmap html
M3D_Get_Extremes html
M3D_Get_Heatmap_Cell_Clusters html
M3D_Plotting html
M3D_Simulations html
M3D_Test_Shift html
M3D_ThreeSet_Venn html
M3D_TraditionalDE html
M3D_calc_var html
M3D_getmarkers html
M3D_horz_res html
NBumi_CheckFit html
NBumi_CoExpression html
NBumi_CompareModels html
NBumi_ConvertToInteger html
NBumi_ConvrtData html
NBumi_FSDrop html
NBumi_FSHighVar html
NBumi_FSOther html
NBumi_FitDisp html
NBumi_FitDispVsMean html
NBumi_FitModel html
NBumi_HVG html
NBumi_TradDE html
NewSimulations html
Other_FS html
PoissonUMIFeatureSelectionDropouts html
bg__fit_gamma html
bg__get_stats html
bg__mean2disp html
bg__shift_size html
bg__var_vs_drop html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'M3Drop' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'M3Drop' as M3Drop_1.18.0.zip
* DONE (M3Drop)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'M3Drop' successfully unpacked and MD5 sums checked
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M3Drop.Rcheck/examples_i386/M3Drop-Ex.timings
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M3Drop.Rcheck/examples_x64/M3Drop-Ex.timings
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