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This page was generated on 2021-10-15 15:06:09 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the IsoformSwitchAnalyzeR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IsoformSwitchAnalyzeR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 951/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| IsoformSwitchAnalyzeR 1.14.1 (landing page) Kristoffer Vitting-Seerup
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: IsoformSwitchAnalyzeR |
| Version: 1.14.1 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/IsoformSwitchAnalyzeR_1.14.1.tar.gz && rm -rf IsoformSwitchAnalyzeR.buildbin-libdir && mkdir IsoformSwitchAnalyzeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IsoformSwitchAnalyzeR.buildbin-libdir IsoformSwitchAnalyzeR_1.14.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL IsoformSwitchAnalyzeR_1.14.1.zip && rm IsoformSwitchAnalyzeR_1.14.1.tar.gz IsoformSwitchAnalyzeR_1.14.1.zip |
| StartedAt: 2021-10-14 10:37:15 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:39:27 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 132.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/IsoformSwitchAnalyzeR_1.14.1.tar.gz && rm -rf IsoformSwitchAnalyzeR.buildbin-libdir && mkdir IsoformSwitchAnalyzeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IsoformSwitchAnalyzeR.buildbin-libdir IsoformSwitchAnalyzeR_1.14.1.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL IsoformSwitchAnalyzeR_1.14.1.zip && rm IsoformSwitchAnalyzeR_1.14.1.tar.gz IsoformSwitchAnalyzeR_1.14.1.zip
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install for i386
* installing *source* package 'IsoformSwitchAnalyzeR' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o IsoformSwitchAnalyzeR.dll tmp.def utils.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/IsoformSwitchAnalyzeR.buildbin-libdir/00LOCK-IsoformSwitchAnalyzeR/00new/IsoformSwitchAnalyzeR/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'IsoformSwitchAnalyzeR'
finding HTML links ... done
CDSSet html
IsoformSwitchTestDEXSeq html
IsoformSwitchTestDRIMSeq html
finding level-2 HTML links ... done
addORFfromGTF html
analyzeAlternativSplicing html
analyzeCPAT html
analyzeCPC2 html
analyzeIUPred2A html
analyzeNetSurf2 html
analyzeNovelIsoformORF html
analyzeORF html
analyzePFAM html
analyzeSignalP html
analyzeSwitchConsequences html
expressionAnalysisPlots html
extractConsequenceEnrichment html
extractConsequenceEnrichmentComparison
html
extractConsequenceSummary html
extractGeneExpression html
extractGenomeWideAnalysis html
extractGenomeWideSplicingAnalysis html
extractSequence html
extractSplicingEnrichment html
extractSplicingEnrichmentComparison html
extractSplicingSummary html
extractSwitchOverlap html
extractSwitchSummary html
extractTopSwitches html
getCDS html
importCufflinksGalaxyData html
importGTF html
importIsoformExpression html
importRdata html
importSalmonData html
isoformSwitchAnalysisCombined html
isoformSwitchAnalysisPart1 html
isoformSwitchAnalysisPart2 html
isoformToGeneExp html
isoformToIsoformFraction html
preFilter html
prepareSalmonFilesDataFrame html
subsetSwitchAnalyzeRlist html
switchAnalyzeRlist html
switchPlot html
switchPlotTopSwitches html
switchPlotTranscript html
testData html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'IsoformSwitchAnalyzeR' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c utils.c -o utils.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o IsoformSwitchAnalyzeR.dll tmp.def utils.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/IsoformSwitchAnalyzeR.buildbin-libdir/IsoformSwitchAnalyzeR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IsoformSwitchAnalyzeR' as IsoformSwitchAnalyzeR_1.14.1.zip
* DONE (IsoformSwitchAnalyzeR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'IsoformSwitchAnalyzeR' successfully unpacked and MD5 sums checked