Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:43 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the IWTomics package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IWTomics.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 962/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
IWTomics 1.16.0 (landing page) Marzia A Cremona
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: IWTomics |
Version: 1.16.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:IWTomics.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings IWTomics_1.16.0.tar.gz |
StartedAt: 2021-10-14 10:20:53 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 10:23:48 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 174.7 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: IWTomics.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:IWTomics.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings IWTomics_1.16.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/IWTomics.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘IWTomics/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘IWTomics’ version ‘1.16.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘IWTomics’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... NOTE Found the following apparent S3 methods exported but not registered: plot.IWTomicsData See section ‘Registering S3 methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Warning: package needs dependence on R (>= 2.10) * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed IWTomicsTest 47.236 0.936 48.180 IWTomicsData-class 12.296 0.060 12.362 IWTomics-package 7.946 0.408 8.359 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.13-bioc/meat/IWTomics.Rcheck/00check.log’ for details.
IWTomics.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL IWTomics ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘IWTomics’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘smooth’ in package ‘IWTomics’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IWTomics)
IWTomics.Rcheck/IWTomics-Ex.timings
name | user | system | elapsed | |
ETn_example | 0.175 | 0.000 | 0.175 | |
IWTomics-package | 7.946 | 0.408 | 8.359 | |
IWTomicsData-class | 12.296 | 0.060 | 12.362 | |
IWTomicsTest | 47.236 | 0.936 | 48.180 | |
features_example | 0.002 | 0.000 | 0.002 | |
plot-IWTomicsData | 0.64 | 0.00 | 0.64 | |
plotSummary | 4.295 | 0.240 | 4.536 | |
plotTest | 2.956 | 0.056 | 3.012 | |
regionsFeatures_center | 0.020 | 0.004 | 0.023 | |
regionsFeatures_scale | 0.022 | 0.000 | 0.021 | |
regions_example | 0.001 | 0.000 | 0.002 | |
smooth-IWTomicsData | 1.666 | 0.019 | 1.685 | |