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This page was generated on 2021-10-15 15:06:09 -0400 (Fri, 15 Oct 2021).

INSTALL results for IVAS on tokay2

To the developers/maintainers of the IVAS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IVAS.git to
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raw results

Package 960/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
IVAS 2.12.0  (landing page)
Seonggyun Han
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/IVAS
git_branch: RELEASE_3_13
git_last_commit: 72bbdb6
git_last_commit_date: 2021-05-19 12:10:52 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: IVAS
Version: 2.12.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/IVAS_2.12.0.tar.gz && rm -rf IVAS.buildbin-libdir && mkdir IVAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IVAS.buildbin-libdir IVAS_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL IVAS_2.12.0.zip && rm IVAS_2.12.0.tar.gz IVAS_2.12.0.zip
StartedAt: 2021-10-14 10:21:51 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 10:22:50 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 59.2 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/IVAS_2.12.0.tar.gz && rm -rf IVAS.buildbin-libdir && mkdir IVAS.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=IVAS.buildbin-libdir IVAS_2.12.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL IVAS_2.12.0.zip && rm IVAS_2.12.0.tar.gz IVAS_2.12.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 20 76515   20 15988    0     0   133k      0 --:--:-- --:--:-- --:--:--  133k
100 76515  100 76515    0     0   483k      0 --:--:-- --:--:-- --:--:--  482k

install for i386

* installing *source* package 'IVAS' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Note: next used in wrong context: no loop is visible 
** help
*** installing help indices
  converting help for package 'IVAS'
    finding HTML links ... done
    ASdb-class                              html  
    CalSigSNP                               html  
    IVAS-deprecated                         html  
    IVAS-package                            html  
    MsqtlFinder                             html  
    RatioFromFPKM                           html  
    Splicingfinder                          html  
    calSignificant                          html  
    chrseparate                             html  
    finding level-2 HTML links ... done

    findAlternative                         html  
    findOversnp                             html  
    sQTLsFinder                             html  
    sampleexp                               html  
    samplesnp                               html  
    samplesnplocus                          html  
    saveBplot                               html  
    sqtlfinder                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'IVAS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'IVAS' as IVAS_2.12.0.zip
* DONE (IVAS)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'IVAS' successfully unpacked and MD5 sums checked