Minoo Ashtiani
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/IMMAN |
| git_branch: RELEASE_3_13 |
| git_last_commit: 9df3185 |
| git_last_commit_date: 2021-05-19 12:34:25 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:43 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the IMMAN package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/IMMAN.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 913/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| IMMAN 1.12.0 (landing page) Minoo Ashtiani
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: IMMAN |
| Version: 1.12.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:IMMAN.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings IMMAN_1.12.0.tar.gz |
| StartedAt: 2021-10-14 10:15:13 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:21:38 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 385.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: IMMAN.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:IMMAN.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings IMMAN_1.12.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/IMMAN.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘IMMAN/DESCRIPTION’ ... OK
* this is package ‘IMMAN’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘IMMAN’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
IMMAN: no visible binding for global variable ‘tem’
IMMAN : <anonymous>: no visible binding for global variable ‘tem’
Undefined global functions or variables:
tem
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
IMMAN 54.653 2 137.724
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.13-bioc/meat/IMMAN.Rcheck/00check.log’
for details.
IMMAN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL IMMAN ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘IMMAN’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IMMAN)
IMMAN.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(IMMAN)
>
> test_check("IMMAN")
trying URL 'https://stringdb-static.org/download/protein.aliases.v11.0/6239.protein.aliases.v11.0.txt.gz'
Content type 'application/octet-stream' length 2902021 bytes (2.8 MB)
==================================================
downloaded 2.8 MB
trying URL 'https://stringdb-static.org/download/protein.info.v11.0/6239.protein.info.v11.0.txt.gz'
Content type 'application/octet-stream' length 675823 bytes (659 KB)
==================================================
downloaded 659 KB
trying URL 'https://stringdb-static.org/download/protein.aliases.v11.0/7227.protein.aliases.v11.0.txt.gz'
Content type 'application/octet-stream' length 4188915 bytes (4.0 MB)
==================================================
downloaded 4.0 MB
trying URL 'https://stringdb-static.org/download/protein.info.v11.0/7227.protein.info.v11.0.txt.gz'
Content type 'application/octet-stream' length 687988 bytes (671 KB)
==================================================
downloaded 671 KB
trying URL 'https://stringdb-static.org/download/protein.links.v11.0/6239.protein.links.v11.0.txt.gz'
Content type 'application/octet-stream' length 48132415 bytes (45.9 MB)
==================================================
downloaded 45.9 MB
trying URL 'https://stringdb-static.org/download/protein.links.v11.0/7227.protein.links.v11.0.txt.gz'
Content type 'application/octet-stream' length 22010066 bytes (21.0 MB)
==================================================
downloaded 21.0 MB
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 2 ]
>
> proc.time()
user system elapsed
60.386 2.065 168.246
IMMAN.Rcheck/IMMAN-Ex.timings
| name | user | system | elapsed | |
| Celegance | 0.006 | 0.000 | 0.006 | |
| FruitFly | 0.002 | 0.000 | 0.002 | |
| H.sapiens | 0.003 | 0.000 | 0.003 | |
| IMMAN | 54.653 | 2.000 | 137.724 | |
| R.norvegicus | 0.001 | 0.002 | 0.003 | |