Zuguang Gu
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/HilbertCurve |
| git_branch: RELEASE_3_13 |
| git_last_commit: 32424fc |
| git_last_commit_date: 2021-05-19 12:14:47 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:07 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the HilbertCurve package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HilbertCurve.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 861/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HilbertCurve 1.22.0 (landing page) Zuguang Gu
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: HilbertCurve |
| Version: 1.22.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:HilbertCurve.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings HilbertCurve_1.22.0.tar.gz |
| StartedAt: 2021-10-15 00:24:43 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 00:28:43 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 239.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HilbertCurve.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:HilbertCurve.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings HilbertCurve_1.22.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/HilbertCurve.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HilbertCurve/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HilbertCurve' version '1.22.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HilbertCurve' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
hc_layer-HilbertCurve-method 10.36 0.62 10.98
hc_layer-GenomicHilbertCurve-method 8.47 0.16 8.63
GenomicHilbertCurve 7.07 0.12 7.63
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
hc_layer-HilbertCurve-method 10.19 0.55 10.74
hc_layer-GenomicHilbertCurve-method 8.95 0.20 9.16
GenomicHilbertCurve 8.15 0.08 8.61
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'test-all.R'
OK
** running tests for arch 'x64' ...
Running 'test-all.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HilbertCurve.Rcheck/00install.out
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###
### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/HilbertCurve_1.22.0.tar.gz && rm -rf HilbertCurve.buildbin-libdir && mkdir HilbertCurve.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HilbertCurve.buildbin-libdir HilbertCurve_1.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL HilbertCurve_1.22.0.zip && rm HilbertCurve_1.22.0.tar.gz HilbertCurve_1.22.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 18.5M 0 154k 0 0 731k 0 0:00:25 --:--:-- 0:00:25 731k
21 18.5M 21 4023k 0 0 3300k 0 0:00:05 0:00:01 0:00:04 3300k
46 18.5M 46 8819k 0 0 4015k 0 0:00:04 0:00:02 0:00:02 4016k
75 18.5M 75 14.0M 0 0 4496k 0 0:00:04 0:00:03 0:00:01 4496k
100 18.5M 100 18.5M 0 0 4806k 0 0:00:03 0:00:03 --:--:-- 4806k
install for i386
* installing *source* package 'HilbertCurve' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'HilbertCurve'
finding HTML links ... done
GenomicHilbertCurve-class html
GenomicHilbertCurve html
HilbertCurve-class html
HilbertCurve html
default_overlay html
hc_centered_text-HilbertCurve-method html
hc_layer-GenomicHilbertCurve-method html
hc_layer-HilbertCurve-method html
hc_layer-dispatch html
hc_level-HilbertCurve-method html
hc_map-GenomicHilbertCurve-method html
hc_normal_points-HilbertCurve-method html
hc_offset-HilbertCurve-method html
hc_png-HilbertCurve-method html
hc_points-GenomicHilbertCurve-method html
hc_points-HilbertCurve-method html
hc_points-dispatch html
hc_polygon-GenomicHilbertCurve-method html
hc_polygon-HilbertCurve-method html
hc_polygon-dispatch html
hc_rect-GenomicHilbertCurve-method html
hc_rect-HilbertCurve-method html
hc_rect-dispatch html
hc_segmented_points-HilbertCurve-method
html
hc_segments-GenomicHilbertCurve-method
html
hc_segments-HilbertCurve-method html
hc_segments-dispatch html
hc_text-GenomicHilbertCurve-method html
hc_text-HilbertCurve-method html
hc_text-dispatch html
is_white html
show-HilbertCurve-method html
unzoom-HilbertCurve-method html
zoom-HilbertCurve-method html
** building package indices
** installing vignettes
'HilbertCurve.Rmd'
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'HilbertCurve' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HilbertCurve' as HilbertCurve_1.22.0.zip
* DONE (HilbertCurve)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'HilbertCurve' successfully unpacked and MD5 sums checked
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HilbertCurve.Rcheck/tests_i386/test-all.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
>
> test_check("HilbertCurve")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
>
> proc.time()
user system elapsed
4.01 0.32 4.32
|
HilbertCurve.Rcheck/tests_x64/test-all.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> suppressWarnings(suppressPackageStartupMessages(library(HilbertCurve)))
>
> test_check("HilbertCurve")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 8 ]
>
> proc.time()
user system elapsed
3.65 0.18 3.82
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HilbertCurve.Rcheck/examples_i386/HilbertCurve-Ex.timings
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HilbertCurve.Rcheck/examples_x64/HilbertCurve-Ex.timings
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