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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/HiCDCPlus_1.0.0.tar.gz && rm -rf HiCDCPlus.buildbin-libdir && mkdir HiCDCPlus.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HiCDCPlus.buildbin-libdir HiCDCPlus_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL HiCDCPlus_1.0.0.zip && rm HiCDCPlus_1.0.0.tar.gz HiCDCPlus_1.0.0.zip
###
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install for i386

* installing *source* package 'HiCDCPlus' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c straw.cpp -o straw.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o HiCDCPlus.dll tmp.def RcppExports.o straw.o -lz -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/HiCDCPlus.buildbin-libdir/00LOCK-HiCDCPlus/00new/HiCDCPlus/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'HiCDCPlus'
    finding HTML links ... done
    HTClist2gi_list                         html  
    HiCDCPlus                               html  
    HiCDCPlus_chr                           html  
    HiCDCPlus_parallel                      html  
    add_1D_features                         html  
    add_2D_features                         html  
    add_hic_counts                          html  
    add_hicpro_allvalidpairs_counts         html  
    add_hicpro_matrix_counts                html  
    construct_features                      html  
    construct_features_chr                  html  
    construct_features_parallel             html  
    expand_1D_features                      html  
    extract_hic_eigenvectors                html  
    generate_binned_gi_list                 html  
    generate_bintolen_gi_list               html  
    generate_df_gi_list                     html  
    get_chr_sizes                           html  
    get_chrs                                html  
    get_enzyme_cutsites                     html  
    gi_list2HTClist                         html  
    gi_list_Dthreshold.detect               html  
    gi_list_binsize_detect                  html  
    gi_list_read                            html  
    gi_list_topdom                          html  
    gi_list_validate                        html  
    gi_list_write                           html  
    hic2icenorm_gi_list                     html  
    hicdc2hic                               html  
    hicdcdiff                               html  
    straw                                   html  
    straw_dump                              html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'HiCDCPlus' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c straw.cpp -o straw.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o HiCDCPlus.dll tmp.def RcppExports.o straw.o -lz -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/HiCDCPlus.buildbin-libdir/HiCDCPlus/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HiCDCPlus' as HiCDCPlus_1.0.0.zip
* DONE (HiCDCPlus)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'HiCDCPlus' successfully unpacked and MD5 sums checked