Back to Multiple platform build/check report for BioC 3.13
ABCDEFG[H]IJKLMNOPQRSTUVWXYZ

This page was generated on 2021-10-15 15:06:07 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for HEM on tokay2

To the developers/maintainers of the HEM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HEM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 851/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
HEM 1.64.0  (landing page)
HyungJun Cho
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/HEM
git_branch: RELEASE_3_13
git_last_commit: 41dddd9
git_last_commit_date: 2021-05-19 11:34:33 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: HEM
Version: 1.64.0
Command: rm -rf HEM.buildbin-libdir && mkdir HEM.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HEM.buildbin-libdir HEM_1.64.0.tar.gz
StartedAt: 2021-10-15 09:46:52 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 09:48:25 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 92.5 seconds
RetCode: 0
Status:   OK  
PackageFile: HEM_1.64.0.zip
PackageFileSize: 685.4 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf HEM.buildbin-libdir && mkdir HEM.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=HEM.buildbin-libdir HEM_1.64.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'HEM' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"c:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c hem.c -o hem.o
hem.c: In function 'onelayerhem':
hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
  int i, j, k, m, n;
            ^
hem.c: In function 'chk_prt':
hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable]
   int i, j, k, l;
                ^
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o HEM.dll tmp.def hem.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/HEM.buildbin-libdir/00LOCK-HEM/00new/HEM/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'HEM'
    finding HTML links ... done
    am.tran                                 html  
    am.tran.half                            html  
    base.ASE.Olig                           html  
    base.PSE.Olig                           html  
    base.error.Olig                         html  
    base.error.Olig.quanOnly                html  
    boot.base.ASE.Olig                      html  
    boot.base.PSE.Olig                      html  
    boot.base.error.Olig                    html  
    fixbound.predict.smooth.spline          html  
    hem                                     html  
    hem.eb.prior                            html  
    hem.fdr                                 html  
    hem.null.no                             html  
    hem.null.one                            html  
    hem.null.two                            html  
    hem.preproc                             html  
    mubcp                                   html  
    nonpar.error.Olig                       html  
    nonpar.no.error.Olig                    html  
    nonpar.rep.error.Olig                   html  
    par.error.Olig                          html  
    par.no.error.Olig                       html  
    par.rep.error.Olig                      html  
    pbrain                                  html  
    permut                                  html  
    quant.norm                              html  
    quant.normal                            html  
    quant.normal2                           html  
    quant.normalize                         html  
    remove.sig.genes                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'HEM' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c hem.c -o hem.o
hem.c: In function 'onelayerhem':
hem.c:1390:12: warning: variable 'k' set but not used [-Wunused-but-set-variable]
  int i, j, k, m, n;
            ^
hem.c: In function 'chk_prt':
hem.c:1593:16: warning: variable 'l' set but not used [-Wunused-but-set-variable]
   int i, j, k, l;
                ^
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o HEM.dll tmp.def hem.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/HEM.buildbin-libdir/HEM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HEM' as HEM_1.64.0.zip
* DONE (HEM)