Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:07 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the GWASTools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GWASTools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 834/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GWASTools 1.38.0 (landing page) Stephanie M. Gogarten
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: GWASTools |
Version: 1.38.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GWASTools_1.38.0.tar.gz && rm -rf GWASTools.buildbin-libdir && mkdir GWASTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GWASTools.buildbin-libdir GWASTools_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GWASTools_1.38.0.zip && rm GWASTools_1.38.0.tar.gz GWASTools_1.38.0.zip |
StartedAt: 2021-10-14 09:52:09 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 09:54:29 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 139.3 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GWASTools_1.38.0.tar.gz && rm -rf GWASTools.buildbin-libdir && mkdir GWASTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GWASTools.buildbin-libdir GWASTools_1.38.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GWASTools_1.38.0.zip && rm GWASTools_1.38.0.tar.gz GWASTools_1.38.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 334k 100 334k 0 0 1259k 0 --:--:-- --:--:-- --:--:-- 1263k install for i386 * installing *source* package 'GWASTools' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'GWASTools' finding HTML links ... done BAFfromClusterMeans html finding level-2 HTML links ... done BAFfromGenotypes html GWASTools-package html GdsGenotypeReader-class html GdsIntensityReader-class html GdsReader-class html GenotypeData-class html GenotypeIterator-class html HLA html IntensityData-class html MatrixGenotypeReader-class html NcdfGenotypeReader-class html NcdfIntensityReader-class html NcdfReader-class html ScanAnnotationDataFrame-class html ScanAnnotationSQLite-class html SnpAnnotationDataFrame-class html SnpAnnotationSQLite-class html alleleFrequency html allequal html anomDetectBAF html anomDetectLOH html anomIdentifyLowQuality html anomSegStats html apartSnpSelection html assocCoxPH html assocRegression html batchTest html centromeres html chromIntensityPlot html convertNcdfGds html createDataFile html defunct html duplicateDiscordance html duplicateDiscordanceAcrossDatasets html duplicateDiscordanceProbability html exactHWE html findBAFvariance html gdsSubset html genoClusterPlot html genotypeToCharacter html getVariable html getobj html hetByScanChrom html hetBySnpSex html ibdPlot html imputedDosageFile html intensityOutliersPlot html manhattanPlot html meanIntensityByScanChrom html mendelErr html mendelList html missingGenotypeByScanChrom html missingGenotypeBySnpSex html pasteSorted html pcaSnpFilters html pedigreeCheck html pedigreeDeleteDuplicates html pedigreeMaxUnrelated html pedigreePairwiseRelatedness html plinkUtils html pseudoautoIntensityPlot html pseudoautosomal html qqPlot html qualityScoreByScan html qualityScoreBySnp html readWriteFirst html relationsMeanVar html saveas html setMissingGenotypes html simulateGenotypeMatrix html snpCorrelationPlot html snpStats html vcfWrite html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GWASTools' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'GWASTools' as GWASTools_1.38.0.zip * DONE (GWASTools) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'GWASTools' successfully unpacked and MD5 sums checked