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This page was generated on 2021-10-15 15:06:38 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the GOsummaries package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GOsummaries.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 794/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GOsummaries 2.28.0 (landing page) Raivo Kolde
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: GOsummaries |
Version: 2.28.0 |
Command: rm -rf GOsummaries.buildbin-libdir && mkdir GOsummaries.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOsummaries_2.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOsummaries.buildbin-libdir |
StartedAt: 2021-10-15 02:37:51 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 02:38:49 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 58.2 seconds |
RetCode: 0 |
Status: OK |
PackageFile: GOsummaries_2.28.0.tgz |
PackageFileSize: 2.456 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GOsummaries.buildbin-libdir && mkdir GOsummaries.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOsummaries_2.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOsummaries.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GOsummaries.buildbin-libdir GOsummaries_2.28.0.tar.gz' >>>>>>> * installing *source* package ‘GOsummaries’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c findCoordinates.cpp -o findCoordinates.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GOsummaries.so findCoordinates.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.13-bioc/meat/GOsummaries.buildbin-libdir/00LOCK-GOsummaries/00new/GOsummaries/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GOsummaries) >>>>>>> >>>>>>> FIXING LINKS FOR GOsummaries.buildbin-libdir/GOsummaries/libs/GOsummaries.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "GOsummaries.buildbin-libdir/GOsummaries/libs/GOsummaries.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "GOsummaries.buildbin-libdir/GOsummaries/libs/GOsummaries.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "GOsummaries.buildbin-libdir/GOsummaries/libs/GOsummaries.so"