Holger Froehlich
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/GOSim |
| git_branch: RELEASE_3_13 |
| git_last_commit: cd2c2c0 |
| git_last_commit_date: 2021-05-19 12:00:43 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:37 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the GOSim package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GOSim.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 791/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GOSim 1.30.0 (landing page) Holger Froehlich
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GOSim |
| Version: 1.30.0 |
| Command: rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOSim_1.30.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOSim.buildbin-libdir |
| StartedAt: 2021-10-15 02:37:35 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 02:38:34 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 58.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GOSim_1.30.0.tgz |
| PackageFileSize: 535.7 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf GOSim.buildbin-libdir && mkdir GOSim.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GOSim_1.30.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GOSim.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GOSim.buildbin-libdir GOSim_1.30.0.tar.gz' >>>>>>> * installing *source* package ‘GOSim’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include `/Library/Frameworks/R.framework/Resources/bin/Rscript -e "require(Rcpp); Rcpp:::CxxFlags()"` -fPIC -Wall -g -O2 -c OAWrapper.cpp -o OAWrapper.o Loading required package: Rcpp clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c hungarian2.c -o hungarian2.o Loading required package: Rcpp clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GOSim.so OAWrapper.o hungarian2.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation Loading required package: Rcpp installing to /Users/biocbuild/bbs-3.13-bioc/meat/GOSim.buildbin-libdir/00LOCK-GOSim/00new/GOSim/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GOSim) >>>>>>> >>>>>>> FIXING LINKS FOR GOSim.buildbin-libdir/GOSim/libs/GOSim.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "GOSim.buildbin-libdir/GOSim/libs/GOSim.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "GOSim.buildbin-libdir/GOSim/libs/GOSim.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "GOSim.buildbin-libdir/GOSim/libs/GOSim.so"