Rezvan Ehsani
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/GAPGOM |
| git_branch: RELEASE_3_13 |
| git_last_commit: e8e35ed |
| git_last_commit_date: 2021-05-19 12:40:41 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:05 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the GAPGOM package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GAPGOM.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 688/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GAPGOM 1.8.0 (landing page) Rezvan Ehsani
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GAPGOM |
| Version: 1.8.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GAPGOM_1.8.0.tar.gz && rm -rf GAPGOM.buildbin-libdir && mkdir GAPGOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GAPGOM.buildbin-libdir GAPGOM_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GAPGOM_1.8.0.zip && rm GAPGOM_1.8.0.tar.gz GAPGOM_1.8.0.zip |
| StartedAt: 2021-10-14 09:52:16 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:53:12 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 56.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GAPGOM_1.8.0.tar.gz && rm -rf GAPGOM.buildbin-libdir && mkdir GAPGOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GAPGOM.buildbin-libdir GAPGOM_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GAPGOM_1.8.0.zip && rm GAPGOM_1.8.0.tar.gz GAPGOM_1.8.0.zip
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install for i386
* installing *source* package 'GAPGOM' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GAPGOM'
finding HTML links ... done
ambiguous_functions html
dag_funcs html
dot-enrichment_analysis html
dot-entrezraw_to_entrez html
dot-ext_id_to_term_id html
dot-fantom_filter_entrez html
dot-generate_translation_df html
dot-get_package_version html
dot-go_ids_lookup html
dot-organism_to_species_lib html
dot-prepare_score_df html
dot-prepare_score_matrix_topoicsim html
dot-prepare_variables_topoicsim html
dot-resolve_genes_unique_gos html
dot-resolve_keys_col html
dot-set_identical_items html
dot-set_values html
dot-term_id_to_ext_id html
dot-topo_ic_sim_g1g2 html
dot-topo_ic_sim_geneset html
dot-topo_ic_sim_titj html
dot-unique_combos html
expression_prediction html
expression_semantic_scoring html
expset html
fantom_download html
fantom_load_raw html
fantom_to_expset html
geometrical_measures html
glb_checks html
id_translation_df html
misc_functions html
set_go_data html
topo_ic_sim_genes html
topo_ic_sim_term html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GAPGOM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GAPGOM' as GAPGOM_1.8.0.zip
* DONE (GAPGOM)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GAPGOM' successfully unpacked and MD5 sums checked