Sofie Van Gassen
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/FlowSOM |
| git_branch: RELEASE_3_13 |
| git_last_commit: 663dedc |
| git_last_commit_date: 2021-05-19 12:10:09 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:05 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the FlowSOM package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FlowSOM.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 661/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| FlowSOM 2.0.0 (landing page) Sofie Van Gassen
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: FlowSOM |
| Version: 2.0.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/FlowSOM_2.0.0.tar.gz && rm -rf FlowSOM.buildbin-libdir && mkdir FlowSOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FlowSOM.buildbin-libdir FlowSOM_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL FlowSOM_2.0.0.zip && rm FlowSOM_2.0.0.tar.gz FlowSOM_2.0.0.zip |
| StartedAt: 2021-10-14 11:24:45 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 11:25:33 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 48.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/FlowSOM_2.0.0.tar.gz && rm -rf FlowSOM.buildbin-libdir && mkdir FlowSOM.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=FlowSOM.buildbin-libdir FlowSOM_2.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL FlowSOM_2.0.0.zip && rm FlowSOM_2.0.0.tar.gz FlowSOM_2.0.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 1196k 100 1196k 0 0 2047k 0 --:--:-- --:--:-- --:--:-- 2052k
install for i386
* installing *source* package 'FlowSOM' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c som.c -o som.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o FlowSOM.dll tmp.def som.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/FlowSOM.buildbin-libdir/00LOCK-FlowSOM/00new/FlowSOM/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'FlowSOM'
finding HTML links ... done
AddAnnotation html
AddBackground html
AddFlowFrame html
AddLabels html
AddMST html
AddNodes html
AddPies html
AddScale html
AddStars html
AddStarsPies html
AggregateFlowFrames html
AutoMaxNodeSize html
BuildMST html
BuildSOM html
CountGroups html
Dist.MST html
FMeasure html
FlowSOM html
FlowSOMSubset html
FlowSOM_colors html
FlowSOMmary html
GetCVs html
GetChannels html
GetClusterCVs html
GetClusterMFIs html
GetClusters html
GetCounts html
GetFeatures html
GetFlowJoLabels html
finding level-2 HTML links ... done
GetMFIs html
GetMarkers html
GetMetaclusterCVs html
GetMetaclusterMFIs html
GetMetaclusters html
GetPercentages html
GroupStats html
Initialize_KWSP html
Initialize_PCA html
ManualVector html
MapDataToCodes html
MetaClustering html
MetaclusterCVs html
MetaclusterMFIs html
NClusters html
NMetaclusters html
NewData html
ParseArcs html
ParseEdges html
ParseLayout html
ParseNodeSize html
ParseQuery html
ParseSD html
Plot2DScatters html
PlotCenters html
PlotClusters2D html
PlotDimRed html
PlotFileScatters html
PlotFlowSOM html
PlotGroups html
PlotLabels html
PlotManualBars html
PlotMarker html
PlotNode html
PlotNumbers html
PlotOverview2D html
PlotPies html
PlotSD html
PlotStars html
PlotVariable html
Purity html
QueryMultiple html
QueryStarPlot html
ReadInput html
ReassignMetaclusters html
RelabelMetaclusters html
SOM html
SaveClustersToFCS html
ScaleStarHeights html
TestOutliers html
UpdateFlowSOM html
UpdateNodeSize html
get_channels html
get_markers html
gg_color_hue html
metaClustering_consensus html
pipe html
plotStarLegend html
print.FlowSOM html
query_multiple html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'FlowSOM' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c som.c -o som.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o FlowSOM.dll tmp.def som.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/FlowSOM.buildbin-libdir/FlowSOM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FlowSOM' as FlowSOM_2.0.0.zip
* DONE (FlowSOM)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'FlowSOM' successfully unpacked and MD5 sums checked