Andrzej Oleś
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/EBImage |
| git_branch: RELEASE_3_13 |
| git_last_commit: b4e3a23 |
| git_last_commit_date: 2021-05-19 11:37:13 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:39 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the EBImage package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EBImage.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 549/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| EBImage 4.34.0 (landing page) Andrzej Oleś
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: EBImage |
| Version: 4.34.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:EBImage.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings EBImage_4.34.0.tar.gz |
| StartedAt: 2021-10-14 09:41:27 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:43:36 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 129.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: EBImage.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:EBImage.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings EBImage_4.34.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/EBImage.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EBImage/DESCRIPTION’ ... OK
* this is package ‘EBImage’ version ‘4.34.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘EBImage’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
EBImage 3.532 0.173 10.265
io 0.584 0.064 61.754
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘test.R’
Comparing ‘test.Rout’ to ‘test.Rout.save’ ...227,229d226
< Warning message:
< In readTIFF(x, all = all, ...) :
< TIFFReadDirectory: Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.
233,303c230,300
< new test (hash=03724aaea0cf64b4)
< checking 'show' ............................... PASS (5a93d2a87828912b) NA
< checking 'print' .............................. PASS (0007ac6dee6a14da) NA
< checking 'hist' ............................... PASS (8ef6dc298b72d591) 544b329c50204069
< checking '>' .................................. PASS (91517a74c2895221) -0.1
< checking '+' .................................. PASS (03724aaea0cf64b4) -0.1
< checking '/' .................................. PASS (03724aaea0cf64b4) -0.1
< checking '*' .................................. PASS (03724aaea0cf64b4) -0.1
< checking 'median' ............................. PASS (8396e8397399bb05) -0.1
< checking 'quantile' ........................... PASS (5e6b34b7d87730f0) -0.1
< checking 'Image' .............................. PASS (e4b04ad17c704314) -0.1
< checking 'as.Image' ........................... PASS (03724aaea0cf64b4) -0.1
< checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
< checking 'imageData' .......................... PASS (1ba6fa2bac2e6157) -0.1
< checking 'imageData<-' ........................ PASS (03724aaea0cf64b4) -0.1
< checking 'as.raster' .......................... PASS (e8f1c1057deba532) NA
< checking 'colorMode<-' ........................ PASS (03724aaea0cf64b4) -0.1
< checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
< checking 'getFrames' .......................... PASS (437d348905e7edea) 83048ee9a100740d
< checking 'display' ............................ PASS (4c9befc7a9f9f22e) 8b45ca00d2ff9b26
< checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
< checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
< checking 'drawCircle' ......................... PASS (76ab1bcd040f633c) 447.9
< checking '[' .................................. PASS (3c13b8fa403f3a61) -0.1
< checking 'resize' ............................. PASS (59b56ab6bbfb3b98) -0.1
< checking 'rotate' ............................. PASS (d9d1aa63f93f02d0) -0.1
< checking 'flip' ............................... PASS (03724aaea0cf64b4) -0.1
< checking 'flop' ............................... PASS (03724aaea0cf64b4) -0.1
< checking 'translate' .......................... PASS (8f2e405bb6973b4a) 1932.9
< checking 'affine' ............................. PASS (03724aaea0cf64b4) -0.1
< checking 'transpose' .......................... PASS (03724aaea0cf64b4) -0.1
< checking 'thresh' ............................. PASS (c13bdaf3a3ddff95) -0.1
< checking 'channel' ............................ PASS (03724aaea0cf64b4) -0.1
< checking 'otsu' ............................... PASS (e3b39ef666a0ce39) -0.09804688
< checking 'bwlabel' ............................ PASS (c13bdaf3a3ddff95) -0.1
< checking 'colorLabels' ........................ PASS (73c6f975aa7b9638) -0.1
< checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
< checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
< checking 'paintObjects' ....................... PASS (03724aaea0cf64b4) -0.1
< checking 'rmObjects' .......................... PASS (c13bdaf3a3ddff95) -0.1
< checking 'reenumerate' ........................ PASS (c13bdaf3a3ddff95) -0.1
< checking 'reenumerate' ........................ PASS (c13bdaf3a3ddff95) -0.1
< checking 'computeFeatures' .................... PASS (d956c282ac7180e4) -0.1
< checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 9bc95f30143c0aa0
< checking 'ocontour' ........................... PASS (0cbbfbd6c2b5057a) 0cbbfbd6c2b5057a
< checking 'normalize' .......................... PASS (03724aaea0cf64b4) -0.1
< checking 'normalize' .......................... PASS (03724aaea0cf64b4) -0.1
< checking 'gblur' .............................. PASS (03724aaea0cf64b4) -0.1
< checking 'filter2' ............................ PASS (03724aaea0cf64b4) -0.1
< checking 'medianFilter' ....................... PASS (03724aaea0cf64b4) -0.1
< checking 'equalize' ........................... PASS (03724aaea0cf64b4) -0.1
< checking 'erode' .............................. PASS (91517a74c2895221) -0.1
< checking 'dilate' ............................. PASS (91517a74c2895221) -0.1
< checking 'opening' ............................ PASS (91517a74c2895221) -0.1
< checking 'closing' ............................ PASS (91517a74c2895221) -0.1
< checking 'whiteTopHat' ........................ PASS (03724aaea0cf64b4) -0.1
< checking 'blackTopHat' ........................ PASS (03724aaea0cf64b4) -0.1
< checking 'selfComplementaryTopHat' ............ PASS (03724aaea0cf64b4) -0.1
< checking 'distmap' ............................ PASS (03724aaea0cf64b4) -0.1
< checking 'watershed' .......................... PASS (c13bdaf3a3ddff95) -0.1
< checking 'floodFill' .......................... PASS (b7521415b91cdd6a) 1039.9
< checking 'fillHull' ........................... PASS (91517a74c2895221) -0.1
< checking 'propagate' .......................... PASS (c13bdaf3a3ddff95) -0.1
< checking 'toRGB' .............................. PASS (73c6f975aa7b9638) -0.1
< checking 'rgbImage' ........................... PASS (73c6f975aa7b9638) -0.1
< checking 'colormap' ........................... PASS (f55f763f0bce6d0e) 2079.9
< checking 'combine' ............................ PASS (7d8cabf23a7147bf) -0.1
< checking 'combine' ............................ PASS (dfe23dd6a6fd08b8) -0.1
< checking 'tile' ............................... PASS (63b8539b976f10f9) 42140.88
< checking 'untile' ............................. PASS (fc2ab5092822346e) 16809.31
< checking 'abind' .............................. PASS (7d8cabf23a7147bf) -0.1
---
> new test (hash=bb3d006dd4423285)
> checking 'show' ............................... PASS (c60852b2f4b4b9e3) NA
> checking 'print' .............................. PASS (01ec99e74b854ba0) NA
> checking 'hist' ............................... PASS (8c46196952e29db3) 34846b0bcea9feb4
> checking '>' .................................. PASS (1b5285e59ce84fa0) -0.1
> checking '+' .................................. PASS (bb3d006dd4423285) -0.1
> checking '/' .................................. PASS (bb3d006dd4423285) -0.1
> checking '*' .................................. PASS (bb3d006dd4423285) -0.1
> checking 'median' ............................. PASS (f5699b21f198d2c3) -0.1
> checking 'quantile' ........................... PASS (003bcd6206f48eaa) -0.1
> checking 'Image' .............................. PASS (99ce97a369121647) -0.1
> checking 'as.Image' ........................... PASS (bb3d006dd4423285) -0.1
> checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
> checking 'imageData' .......................... PASS (b51b95b0ba6f4dce) -0.1
> checking 'imageData<-' ........................ PASS (bb3d006dd4423285) -0.1
> checking 'as.raster' .......................... PASS (1675cda1d5c380fa) NA
> checking 'colorMode<-' ........................ PASS (bb3d006dd4423285) -0.1
> checking 'numberOfFrames' ..................... PASS (96180b4a6b132e65) 0.9
> checking 'getFrames' .......................... PASS (d6919177c682b8b7) 14ff3acc3c64b912
> checking 'display' ............................ PASS (8c4f07b8386609ca) 9a746e3b1818a41e
> checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
> checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
> checking 'drawCircle' ......................... PASS (f78ee95d7e176d93) 447.9
> checking '[' .................................. PASS (7e14c53ed4d31621) -0.1
> checking 'resize' ............................. PASS (a1c9da3458e151e8) -0.1
> checking 'rotate' ............................. PASS (6ace606563c0af26) -0.1
> checking 'flip' ............................... PASS (bb3d006dd4423285) -0.1
> checking 'flop' ............................... PASS (bb3d006dd4423285) -0.1
> checking 'translate' .......................... PASS (574e9cac8770a1fd) 1932.9
> checking 'affine' ............................. PASS (bb3d006dd4423285) -0.1
> checking 'transpose' .......................... PASS (bb3d006dd4423285) -0.1
> checking 'thresh' ............................. PASS (15bf2ee33450c598) -0.1
> checking 'channel' ............................ PASS (bb3d006dd4423285) -0.1
> checking 'otsu' ............................... PASS (cbe8a6c6aa2e8245) -0.09804688
> checking 'bwlabel' ............................ PASS (15bf2ee33450c598) -0.1
> checking 'colorLabels' ........................ PASS (5cb6a857d91ed0ea) -0.1
> checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
> checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
> checking 'paintObjects' ....................... PASS (bb3d006dd4423285) -0.1
> checking 'rmObjects' .......................... PASS (15bf2ee33450c598) -0.1
> checking 'reenumerate' ........................ PASS (15bf2ee33450c598) -0.1
> checking 'reenumerate' ........................ PASS (15bf2ee33450c598) -0.1
> checking 'computeFeatures' .................... PASS (57f54e3531a18f4e) -0.1
> checking 'computeFeatures' .................... PASS (6dc4c63dde7e7828) 32d95b1456f80f68
> checking 'ocontour' ........................... PASS (236bd4454cc8e13c) 236bd4454cc8e13c
> checking 'normalize' .......................... PASS (bb3d006dd4423285) -0.1
> checking 'normalize' .......................... PASS (bb3d006dd4423285) -0.1
> checking 'gblur' .............................. PASS (bb3d006dd4423285) -0.1
> checking 'filter2' ............................ PASS (bb3d006dd4423285) -0.1
> checking 'medianFilter' ....................... PASS (bb3d006dd4423285) -0.1
> checking 'equalize' ........................... PASS (bb3d006dd4423285) -0.1
> checking 'erode' .............................. PASS (1b5285e59ce84fa0) -0.1
> checking 'dilate' ............................. PASS (1b5285e59ce84fa0) -0.1
> checking 'opening' ............................ PASS (1b5285e59ce84fa0) -0.1
> checking 'closing' ............................ PASS (1b5285e59ce84fa0) -0.1
> checking 'whiteTopHat' ........................ PASS (bb3d006dd4423285) -0.1
> checking 'blackTopHat' ........................ PASS (bb3d006dd4423285) -0.1
> checking 'selfComplementaryTopHat' ............ PASS (bb3d006dd4423285) -0.1
> checking 'distmap' ............................ PASS (bb3d006dd4423285) -0.1
> checking 'watershed' .......................... PASS (15bf2ee33450c598) -0.1
> checking 'floodFill' .......................... PASS (02f684c8d407c0f3) 1039.9
> checking 'fillHull' ........................... PASS (1b5285e59ce84fa0) -0.1
> checking 'propagate' .......................... PASS (15bf2ee33450c598) -0.1
> checking 'toRGB' .............................. PASS (5cb6a857d91ed0ea) -0.1
> checking 'rgbImage' ........................... PASS (5cb6a857d91ed0ea) -0.1
> checking 'colormap' ........................... PASS (4fc03a2c05330d87) 2079.9
> checking 'combine' ............................ PASS (7587cd4863b3f3d0) -0.1
> checking 'combine' ............................ PASS (8cc517353533c670) -0.1
> checking 'tile' ............................... PASS (9c28fe28dabc9dc0) 42140.88
> checking 'untile' ............................. PASS (f57349ddce21e8e1) 16809.31
> checking 'abind' .............................. PASS (7587cd4863b3f3d0) -0.1
312,383c309,380
< new test (hash=5e369a5a8c06ea6e)
< checking 'show' ............................... PASS (d7ff39dcf34291a7) NA
< checking 'print' .............................. PASS (423045c171032825) NA
< checking 'hist' ............................... PASS (c32dc2571db86a0f) da29db1ad663925e
< checking '>' .................................. PASS (ab60d77d8694845c) 324.9
< checking '+' .................................. PASS (ccb4c957b356b423) 649.9
< checking '/' .................................. PASS (e68dd3c4bf42ae06) 162.4
< checking '*' .................................. PASS (ccb4c957b356b423) 649.9
< checking 'median' ............................. PASS (7c79dea3bfc1415b) 0.9
< checking 'quantile' ........................... PASS (03ab24e6a573bd6b) 14.9
< checking 'Image' .............................. PASS (e06d5f65342df035) 324.9
< checking 'as.Image' ........................... PASS (5e369a5a8c06ea6e) 324.9
< checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
< checking 'imageData' .......................... PASS (a72e950dc2c633c4) 324.9
< checking 'imageData<-' ........................ PASS (5e369a5a8c06ea6e) 324.9
< checking 'as.raster' .......................... PASS (76158aebe747f7e1) NA
< checking 'colorMode<-' ........................ PASS (5e369a5a8c06ea6e) 324.9
< checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
< checking 'getFrames' .......................... PASS (5be9802bf124fe9c) 0793da5ae058772e
< checking 'display' ............................ PASS (174250a6d96dee60) 5fa8470e1b05b374
< checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
< checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
< checking 'drawCircle' ......................... PASS (a3847050dd15905c) 324.9
< checking '[' .................................. PASS (5e369a5a8c06ea6e) 324.9
< checking 'resize' ............................. PASS (81601207cc4e4223) 4543605
< checking 'rotate' ............................. PASS (3db98677c68c5102) 483.6843
< checking 'flip' ............................... PASS (5e369a5a8c06ea6e) 324.9
< checking 'flop' ............................... PASS (5e369a5a8c06ea6e) 324.9
< checking 'translate' .......................... PASS (a3847050dd15905c) 324.9
< checking 'affine' ............................. PASS (92683959c9ed97c3) 39.9
< checking 'transpose' .......................... PASS (5e369a5a8c06ea6e) 324.9
< checking 'thresh' ............................. PASS (dafc92132d191221) -0.1
< checking 'channel' ............................ PASS (5e369a5a8c06ea6e) 324.9
< checking 'otsu' ............................... PASS (2abebb5cf42f343e) 0.8980469
< checking 'bwlabel' ............................ PASS (5e369a5a8c06ea6e) 324.9
< checking 'colorLabels' ........................ PASS (a7e8ce686b7c6eec) 2849.9
< checking 'stackObjects' ....................... PASS (995b03d1197fdd56) 324.9
< checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
< checking 'paintObjects' ....................... PASS (fbe94deb2c7c7e12) 270.7333
< checking 'rmObjects' .......................... PASS (dafc92132d191221) -0.1
< checking 'reenumerate' ........................ PASS (dafc92132d191221) -0.1
< checking 'reenumerate' ........................ PASS (5e369a5a8c06ea6e) 324.9
< checking 'computeFeatures' .................... PASS (1e197f38fe3db7df) 950932.9
< checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 9bc95f30143c0aa0
< checking 'ocontour' ........................... PASS (1ad47b9dc5e279b9) 5742434f54ead73b
< checking 'localCurvature' ..................... PASS (07aef8b9d0c42e30) a52d22f2e3bb2222
< checking 'normalize' .......................... PASS (a3847050dd15905c) 324.9
< checking 'normalize' .......................... PASS (a3847050dd15905c) 324.9
< checking 'gblur' .............................. PASS (34be5e3328df689f) NA
< checking 'filter2' ............................ PASS (046936d9c22a44d3) 8124.9
< checking 'medianFilter' ....................... PASS (a3847050dd15905c) 324.9
< checking 'equalize' ........................... PASS (5e369a5a8c06ea6e) 324.9
< checking 'erode' .............................. PASS (ab60d77d8694845c) 324.9
< checking 'dilate' ............................. PASS (ab60d77d8694845c) 324.9
< checking 'opening' ............................ PASS (ab60d77d8694845c) 324.9
< checking 'closing' ............................ PASS (ab60d77d8694845c) 324.9
< checking 'whiteTopHat' ........................ PASS (dafc92132d191221) -0.1
< checking 'blackTopHat' ........................ PASS (dafc92132d191221) -0.1
< checking 'selfComplementaryTopHat' ............ PASS (ccb4c957b356b423) 649.9
< checking 'distmap' ............................ PASS (4620168ff1c2a437) Inf
< checking 'watershed' .......................... PASS (5e369a5a8c06ea6e) 324.9
< checking 'floodFill' .......................... PASS (dafc92132d191221) -0.1
< checking 'fillHull' ........................... PASS (ab60d77d8694845c) 324.9
< checking 'propagate' .......................... PASS (dafc92132d191221) -0.1
< checking 'toRGB' .............................. PASS (f3b87c6a40e54c68) 2849.9
< checking 'rgbImage' ........................... PASS (a1c021690e069b07) 1274.9
< checking 'colormap' ........................... PASS (948ec87fd2adc7a9) 2652.253
< checking 'combine' ............................ PASS (8c39678924e12a09) 1274.9
< checking 'combine' ............................ PASS (072d49f53072e43b) 7874.9
< checking 'tile' ............................... PASS (16eb65ee8bbcb932) 24420.64
< checking 'untile' ............................. PASS (8bcebbd606485233) 10445.49
< checking 'abind' .............................. PASS (8c39678924e12a09) 1274.9
---
> new test (hash=fd2903042f6577db)
> checking 'show' ............................... PASS (d5cb02fa53f44540) NA
> checking 'print' .............................. PASS (19e6cb20d3a1bbed) NA
> checking 'hist' ............................... PASS (92c01a74babbd9d2) 885b2aa14f6149d7
> checking '>' .................................. PASS (57132767bf0cf5c4) 324.9
> checking '+' .................................. PASS (78a44d6226d9747a) 649.9
> checking '/' .................................. PASS (35e25cdc915f220c) 162.4
> checking '*' .................................. PASS (78a44d6226d9747a) 649.9
> checking 'median' ............................. PASS (96180b4a6b132e65) 0.9
> checking 'quantile' ........................... PASS (e438e836956ab833) 14.9
> checking 'Image' .............................. PASS (25cb6efefa0c888d) 324.9
> checking 'as.Image' ........................... PASS (fd2903042f6577db) 324.9
> checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
> checking 'imageData' .......................... PASS (8657532cd462ea81) 324.9
> checking 'imageData<-' ........................ PASS (fd2903042f6577db) 324.9
> checking 'as.raster' .......................... PASS (f789919d8c93fb15) NA
> checking 'colorMode<-' ........................ PASS (fd2903042f6577db) 324.9
> checking 'numberOfFrames' ..................... PASS (96180b4a6b132e65) 0.9
> checking 'getFrames' .......................... PASS (5fc2af241f80dfe3) 792ca128c76659ed
> checking 'display' ............................ PASS (19741a401daf92e2) e4e805547bbe7024
> checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
> checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
> checking 'drawCircle' ......................... PASS (545d29ae11f62e79) 324.9
> checking '[' .................................. PASS (fd2903042f6577db) 324.9
> checking 'resize' ............................. PASS (066442c79b5dbc5d) 4543605
> checking 'rotate' ............................. PASS (6fef9b3e4085e72c) 483.6843
> checking 'flip' ............................... PASS (fd2903042f6577db) 324.9
> checking 'flop' ............................... PASS (fd2903042f6577db) 324.9
> checking 'translate' .......................... PASS (545d29ae11f62e79) 324.9
> checking 'affine' ............................. PASS (dc78180c379f20d2) 39.9
> checking 'transpose' .......................... PASS (fd2903042f6577db) 324.9
> checking 'thresh' ............................. PASS (9a58bf6b1ef39788) -0.1
> checking 'channel' ............................ PASS (fd2903042f6577db) 324.9
> checking 'otsu' ............................... PASS (f397fccddb916350) 0.8980469
> checking 'bwlabel' ............................ PASS (fd2903042f6577db) 324.9
> checking 'colorLabels' ........................ PASS (5a10b69b9bb71739) 2849.9
> checking 'stackObjects' ....................... PASS (8f1472c017e2814c) 324.9
> checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
> checking 'paintObjects' ....................... PASS (51f47541d96a6ecf) 270.7333
> checking 'rmObjects' .......................... PASS (9a58bf6b1ef39788) -0.1
> checking 'reenumerate' ........................ PASS (9a58bf6b1ef39788) -0.1
> checking 'reenumerate' ........................ PASS (fd2903042f6577db) 324.9
> checking 'computeFeatures' .................... PASS (559dfc74a97494a3) 950932.9
> checking 'computeFeatures' .................... PASS (6dc4c63dde7e7828) 32d95b1456f80f68
> checking 'ocontour' ........................... PASS (2663ed016907f460) 2cd2b9ad99f98fd3
> checking 'localCurvature' ..................... PASS (80236128c43c5c64) aa70763bde359b48
> checking 'normalize' .......................... PASS (545d29ae11f62e79) 324.9
> checking 'normalize' .......................... PASS (545d29ae11f62e79) 324.9
> checking 'gblur' .............................. PASS (19cc14ba61b7caea) NA
> checking 'filter2' ............................ PASS (a98d049f987b512a) 8124.9
> checking 'medianFilter' ....................... PASS (545d29ae11f62e79) 324.9
> checking 'equalize' ........................... PASS (fd2903042f6577db) 324.9
> checking 'erode' .............................. PASS (57132767bf0cf5c4) 324.9
> checking 'dilate' ............................. PASS (57132767bf0cf5c4) 324.9
> checking 'opening' ............................ PASS (57132767bf0cf5c4) 324.9
> checking 'closing' ............................ PASS (57132767bf0cf5c4) 324.9
> checking 'whiteTopHat' ........................ PASS (9a58bf6b1ef39788) -0.1
> checking 'blackTopHat' ........................ PASS (9a58bf6b1ef39788) -0.1
> checking 'selfComplementaryTopHat' ............ PASS (78a44d6226d9747a) 649.9
> checking 'distmap' ............................ PASS (2690b089a32348c7) Inf
> checking 'watershed' .......................... PASS (fd2903042f6577db) 324.9
> checking 'floodFill' .......................... PASS (9a58bf6b1ef39788) -0.1
> checking 'fillHull' ........................... PASS (57132767bf0cf5c4) 324.9
> checking 'propagate' .......................... PASS (9a58bf6b1ef39788) -0.1
> checking 'toRGB' .............................. PASS (c8f79be3016a4f30) 2849.9
> checking 'rgbImage' ........................... PASS (04e5727b08bf45cb) 1274.9
> checking 'colormap' ........................... PASS (465b64f5769d9429) 2652.253
> checking 'combine' ............................ PASS (4d32f0cd424c46ed) 1274.9
> checking 'combine' ............................ PASS (d235aa9dfa5f7f28) 7874.9
> checking 'tile' ............................... PASS (d78128e72e9c8cfb) 24420.64
> checking 'untile' ............................. PASS (2f982bd94f9d06ba) 10445.49
> checking 'abind' .............................. PASS (4d32f0cd424c46ed) 1274.9
394,465c391,462
< new test (hash=3e469356855e6210)
< checking 'show' ............................... PASS (0c6212669ee6288d) NA
< checking 'print' .............................. PASS (0c6212669ee6288d) NA
< checking 'hist' ............................... PASS (e7a708b4f96f88dc) bb3d9d4fe47f137d
< checking '>' .................................. PASS (0a927a877b0b85eb) 1217568
< checking '+' .................................. PASS (2c51607a58b46974) 2940144
< checking '/' .................................. PASS (a872fc97379d58f5) 735035.9
< checking '*' .................................. PASS (2c51607a58b46974) 2940144
< checking 'median' ............................. PASS (d2a8be6a346c3d28) 0.04509804
< checking 'quantile' ........................... PASS (645f4aadbce7bdea) 7.331373
< checking 'Image' .............................. PASS (923c3911d773eb6e) 1470072
< checking 'as.Image' ........................... PASS (b7ae9a016c5a19ec) 1470072
< checking 'is.Image' ........................... PASS (69f0cf1cfd5cd8ed) -0.1
< checking 'imageData' .......................... PASS (3e469356855e6210) 1470072
< checking 'imageData<-' ........................ PASS (3e469356855e6210) 1470072
< checking 'as.raster' .......................... PASS (42efa6b3b04694cf) NA
< checking 'colorMode<-' ........................ PASS (b8d002268bfac3eb) NA
< checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
< checking 'getFrames' .......................... PASS (d38b8f6c1a1504a8) 31b837e1233e61ed
< checking 'display' ............................ PASS (dada341199e50c3d) e71f191dd8006bab
< checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
< checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
< checking 'drawCircle' ......................... PASS (872845fa91c628a6) 1607165
< checking '[' .................................. PASS (711703fde7cc915e) 48.94314
< checking 'resize' ............................. PASS (7882055c8b670bf4) 1419476
< checking 'rotate' ............................. PASS (559860bb5c99cb82) 2493977
< checking 'flip' ............................... PASS (8834ca70d449207a) 1195977
< checking 'flop' ............................... PASS (d73abd773dfc066a) 1462119
< checking 'translate' .......................... PASS (5744e19288b9d7f0) 2133961
< checking 'affine' ............................. PASS (11616142290451c1) 54171.17
< checking 'transpose' .......................... PASS (aa87d51a100b139f) 1522055
< checking 'thresh' ............................. PASS (c790c6a6872d73d0) 1262811
< checking 'channel' ............................ PASS (3e469356855e6210) 1470072
< checking 'otsu' ............................... PASS (3aea1e91f3716bcb) 0.3160156
< checking 'bwlabel' ............................ PASS (5055cb94d5293a15) 1199387
< checking 'colorLabels' ........................ PASS (464d65c8da42be0d) 10021713
< checking 'stackObjects' ....................... PASS (c5669f863a2ba20e) 718602.9
< checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
< checking 'paintObjects' ....................... PASS (19a9fbb907cee1c4) 1447733
< checking 'rmObjects' .......................... PASS (365ace8a4657cb08) -0.1
< checking 'reenumerate' ........................ PASS (365ace8a4657cb08) -0.1
< checking 'reenumerate' ........................ PASS (5055cb94d5293a15) 1199387
< checking 'computeFeatures' .................... PASS (f59aa3f08e782acf) 3634215
< checking 'computeFeatures' .................... PASS (4e7e75f941531854) 162981db75daaae7
< checking 'ocontour' ........................... PASS (790a5f5b45092d41) 57adc3055202768b
< checking 'localCurvature' ..................... PASS (fb6d4b13b08dcac4) be6c48fc7c8a3c8a
< checking 'normalize' .......................... PASS (1f79956b7887dd73) 1431381
< checking 'normalize' .......................... PASS (13a2d37d997199f9) 1266798
< checking 'gblur' .............................. PASS (203a6d72b1fd5eba) 1466231
< checking 'filter2' ............................ PASS (c82a1ece6902714d) 36592176
< checking 'medianFilter' ....................... PASS (4140c87b3a1db93d) 1454712
< checking 'equalize' ........................... PASS (ba175363e5576ad1) 2642794
< checking 'erode' .............................. PASS (bee7898f6d8d547b) 759774.9
< checking 'dilate' ............................. PASS (ed04adac54c645fd) 1797576
< checking 'opening' ............................ PASS (d1c6ca8aafbd90cb) 1152484
< checking 'closing' ............................ PASS (b8cf094b52fe1744) 1232737
< checking 'whiteTopHat' ........................ PASS (9b53631dd222dd50) 18730.15
< checking 'blackTopHat' ........................ PASS (089cd73847d97de5) 27716.23
< checking 'selfComplementaryTopHat' ............ PASS (cc378ce1d0553ecd) 2929436
< checking 'distmap' ............................ PASS (f98a44bf21faa222) 3826969
< checking 'watershed' .......................... PASS (b39c109238f0c74b) 2762113
< checking 'floodFill' .......................... PASS (c59341ffade6129a) 1470197
< checking 'fillHull' ........................... PASS (0a927a877b0b85eb) 1217568
< checking 'propagate' .......................... PASS (cec466bef7a2a81e) 3464201
< checking 'toRGB' .............................. PASS (5051d2b131286d46) 12381911
< checking 'rgbImage' ........................... PASS (ccc09b31890cd8df) 4859544
< checking 'colormap' ........................... PASS (b7020f3851eb7d7c) 11126039
< checking 'combine' ............................ PASS (5bda9f75cbc23401) 5597376
< checking 'combine' ............................ PASS (306e27bb3ec346e6) 33922678
< checking 'tile' ............................... PASS (870e7501fa1f3338) 78718054
< checking 'untile' ............................. PASS (868893e062dea032) 72597772
< checking 'abind' .............................. PASS (5bda9f75cbc23401) 5597376
---
> new test (hash=ea1a665d75817fbb)
> checking 'show' ............................... PASS (642a853c4a9fb245) NA
> checking 'print' .............................. PASS (642a853c4a9fb245) NA
> checking 'hist' ............................... PASS (758d77d39292aceb) 22261eb2334cd65e
> checking '>' .................................. PASS (b630618a382dd149) 1217568
> checking '+' .................................. PASS (78bcec8b0be50e22) 2940144
> checking '/' .................................. PASS (eaac0e8ec321e267) 735035.9
> checking '*' .................................. PASS (78bcec8b0be50e22) 2940144
> checking 'median' ............................. PASS (0ba48ebb83d20dcf) 0.04509804
> checking 'quantile' ........................... PASS (922eedf2ceb73c21) 7.331373
> checking 'Image' .............................. PASS (930c159d012125dd) 1470072
> checking 'as.Image' ........................... PASS (d2785eea34628f36) 1470072
> checking 'is.Image' ........................... PASS (7a36fa498bbfcb30) -0.1
> checking 'imageData' .......................... PASS (ea1a665d75817fbb) 1470072
> checking 'imageData<-' ........................ PASS (ea1a665d75817fbb) 1470072
> checking 'as.raster' .......................... PASS (92e268a98a202d0d) NA
> checking 'colorMode<-' ........................ PASS (2f347dbc7d4df203) NA
> checking 'numberOfFrames' ..................... PASS (96180b4a6b132e65) 0.9
> checking 'getFrames' .......................... PASS (c8a1bed0f342ba9c) f9df249b9d461561
> checking 'display' ............................ PASS (e5abc9317013ef0f) 4597ff5701547c38
> checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
> checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
> checking 'drawCircle' ......................... PASS (d3ac30a887c990f0) 1607165
> checking '[' .................................. PASS (9bb7b574fc489848) 48.94314
> checking 'resize' ............................. PASS (00fab9ec40eb5e2f) 1419476
> checking 'rotate' ............................. PASS (447c32314cc4e9d7) 2493977
> checking 'flip' ............................... PASS (a8c542a26b0874e8) 1195977
> checking 'flop' ............................... PASS (7e68dec7614712d2) 1462119
> checking 'translate' .......................... PASS (21641bbeafdcbc39) 2133961
> checking 'affine' ............................. PASS (1ed86f465543429e) 54171.17
> checking 'transpose' .......................... PASS (f39a2b54df5d5df8) 1522055
> checking 'thresh' ............................. PASS (aed13a82eaa0d6f6) 1262811
> checking 'channel' ............................ PASS (ea1a665d75817fbb) 1470072
> checking 'otsu' ............................... PASS (0c822739ccd9b674) 0.3160156
> checking 'bwlabel' ............................ PASS (d2978ac5475fd985) 1199387
> checking 'colorLabels' ........................ PASS (0505b0b4e09d05ed) 10021713
> checking 'stackObjects' ....................... PASS (f8eb9b4047e677fb) 718602.9
> checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
> checking 'paintObjects' ....................... PASS (f064eb914151d29d) 1447733
> checking 'rmObjects' .......................... PASS (8f36486b7880f33a) -0.1
> checking 'reenumerate' ........................ PASS (8f36486b7880f33a) -0.1
> checking 'reenumerate' ........................ PASS (d2978ac5475fd985) 1199387
> checking 'computeFeatures' .................... PASS (9dca8bdb6fc6383c) 3634215
> checking 'computeFeatures' .................... PASS (3a766122214a21a8) cf1b0ac94ace207a
> checking 'ocontour' ........................... PASS (ddb1a61382610e29) 0dab270d98fdbdd8
> checking 'localCurvature' ..................... PASS (48edb77f99eb5e0a) a351f1682141f4de
> checking 'normalize' .......................... PASS (dd024957ed9be970) 1431381
> checking 'normalize' .......................... PASS (327914cc2a95292d) 1266798
> checking 'gblur' .............................. PASS (ba634c0d6cb869f5) 1466231
> checking 'filter2' ............................ PASS (b1783e1383b0d429) 36592176
> checking 'medianFilter' ....................... PASS (f73f9cb355632e37) 1454712
> checking 'equalize' ........................... PASS (3229c589865d1dd0) 2642794
> checking 'erode' .............................. PASS (a808a82152309cd0) 759774.9
> checking 'dilate' ............................. PASS (6ad0a88f208f30d0) 1797576
> checking 'opening' ............................ PASS (14899fd17ddf0b81) 1152484
> checking 'closing' ............................ PASS (8f3f27e6caed70de) 1232737
> checking 'whiteTopHat' ........................ PASS (0461dfe452491caf) 18730.15
> checking 'blackTopHat' ........................ PASS (8f53c6a02fcc449b) 27716.23
> checking 'selfComplementaryTopHat' ............ PASS (53e3b78d71635465) 2929436
> checking 'distmap' ............................ PASS (66da40cd47ec8762) 3826969
> checking 'watershed' .......................... PASS (fe4e99c1bb5f9562) 2762113
> checking 'floodFill' .......................... PASS (e508f01acf50e00d) 1470197
> checking 'fillHull' ........................... PASS (b630618a382dd149) 1217568
> checking 'propagate' .......................... PASS (9e56846cb0e2b112) 3464201
> checking 'toRGB' .............................. PASS (7b33402954c29951) 12381911
> checking 'rgbImage' ........................... PASS (c44ead1803e628d9) 4859544
> checking 'colormap' ........................... PASS (fbcba322d3f5c951) 11126039
> checking 'combine' ............................ PASS (3f46a10efaaab318) 5597376
> checking 'combine' ............................ PASS (c2857e1a820b6b96) 33922678
> checking 'tile' ............................... PASS (78eab32eac869231) 78718054
> checking 'untile' ............................. PASS (59f8bb36c4481a79) 72597772
> checking 'abind' .............................. PASS (3f46a10efaaab318) 5597376
476,547c473,544
< new test (hash=7718e616f411c340)
< checking 'show' ............................... PASS (1a2c30323dd5a8ee) NA
< checking 'print' .............................. PASS (e9fad67b70709e2b) NA
< checking 'hist' ............................... PASS (596b544e7cd6f458) e99389080830c142
< checking '>' .................................. PASS (e72c38d763e5fabf) 988518.9
< checking '+' .................................. PASS (e38cf73f1c0c88a2) 1531522
< checking '/' .................................. PASS (df4e8bf818fc26fe) 382880.4
< checking '*' .................................. PASS (e38cf73f1c0c88a2) 1531522
< checking 'median' ............................. PASS (fc60ee4b14ba4a28) 0.5039216
< checking 'quantile' ........................... PASS (436f03b8c9c3ad0e) 10.10392
< checking 'Image' .............................. PASS (7718e616f411c340) 765760.9
< checking 'as.Image' ........................... PASS (7718e616f411c340) 765760.9
< checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
< checking 'imageData' .......................... PASS (19c51d4d9d30d60c) 765760.9
< checking 'imageData<-' ........................ PASS (7718e616f411c340) 765760.9
< checking 'as.raster' .......................... PASS (05c68b3f51ec838b) NA
< checking 'colorMode<-' ........................ PASS (733871e596e328df) 765760.9
< checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
< checking 'getFrames' .......................... PASS (681aab4c8a24c6c5) e6dc356666b6251c
< checking 'display' ............................ PASS (bb2b4586191eb980) 46a272316ccb58ef
< checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
< checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
< checking 'drawCircle' ......................... PASS (a6757bb66994b1f7) 782100.7
< checking '[' .................................. PASS (25a626878222798c) 1285.273
< checking 'resize' ............................. PASS (bb1209a84d6b3709) 2941770
< checking 'rotate' ............................. PASS (924fc66d1ec91d44) 1247487
< checking 'flip' ............................... PASS (828db3b8ad878bd6) 661525.2
< checking 'flop' ............................... PASS (f69b431f36c97abd) 768451.1
< checking 'translate' .......................... PASS (3eb2fe0d22e461ed) 820434.5
< checking 'affine' ............................. PASS (7a760844869cec92) 22238.15
< checking 'transpose' .......................... PASS (d438f72715d302ed) 652051.4
< checking 'thresh' ............................. PASS (8b3a72b493ab8540) 382924.9
< checking 'channel' ............................ PASS (3982766c7e1077b3) 162800.7
< checking 'otsu' ............................... PASS (ebd9ed7a0cf4831d) 0.03085937
< checking 'bwlabel' ............................ PASS (498723eb57bcca48) 832970.9
< checking 'colorLabels' ........................ PASS (ecbf282c48506ef2) 3692613
< checking 'stackObjects' ....................... PASS (e30de50cc1d8e117) 596493.9
< checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
< checking 'paintObjects' ....................... PASS (9b5026b178720a80) 919069.9
< checking 'rmObjects' .......................... PASS (e0ab50f8e544290a) 565.9
< checking 'reenumerate' ........................ PASS (e0ab50f8e544290a) 565.9
< checking 'reenumerate' ........................ PASS (498723eb57bcca48) 832970.9
< checking 'computeFeatures' .................... PASS (0e0499b50d90be9d) 3988836
< checking 'computeFeatures' .................... PASS (4e7e75f941531854) 162981db75daaae7
< checking 'ocontour' ........................... PASS (ced9c409ca879dc9) 307e5271f94742ce
< checking 'localCurvature' ..................... PASS (25e900bf67a8cdb0) 7faa95a1a5954a9d
< checking 'normalize' .......................... PASS (b8b2cfe4f431fc83) 747801.4
< checking 'normalize' .......................... PASS (3ee0aade2890ed53) 809649.2
< checking 'gblur' .............................. PASS (0c28ab262af637d1) 761679.3
< checking 'filter2' ............................ PASS (bf01322f9e0aed7a) 19130329
< checking 'medianFilter' ....................... PASS (189cf2d04b2316f5) 765141.6
< checking 'equalize' ........................... PASS (b525d614a289c5a3) 705546.8
< checking 'erode' .............................. PASS (84add15c6fa8ac14) 908526.9
< checking 'dilate' ............................. PASS (e99e1ecfd4ef49d3) 1072658
< checking 'opening' ............................ PASS (80d457c0bcd57e44) 985798.9
< checking 'closing' ............................ PASS (cc9339fed43d2c52) 988727.9
< checking 'whiteTopHat' ........................ PASS (25444773943cf26b) 3572.998
< checking 'blackTopHat' ........................ PASS (10fae7d8c0f86c96) 7139.473
< checking 'selfComplementaryTopHat' ............ PASS (2f97211e82aa8221) 1533178
< checking 'distmap' ............................ PASS (218b9e66643db8d3) 12740449
< checking 'watershed' .......................... PASS (6edd3aa33ad54089) 988518.9
< checking 'floodFill' .......................... PASS (228b47626610f8c9) 765755.4
< checking 'fillHull' ........................... PASS (e72c38d763e5fabf) 988518.9
< checking 'propagate' .......................... PASS (73d53b87d72f0409) 26630579
< checking 'toRGB' .............................. PASS (7718e616f411c340) 765760.9
< checking 'rgbImage' ........................... PASS (6df3c3d16757cdd6) 3520680
< checking 'colormap' ........................... PASS (8e7f90c18580cd50) 1816912
< checking 'combine' ............................ PASS (f156de3e1aff037c) 2960568
< checking 'combine' ............................ PASS (1bfd38ce66379070) 18119267
< checking 'tile' ............................... PASS (3f8e8f9b949597b4) 33061491
< checking 'untile' ............................. PASS (9f839c04542fa7e4) 27788327
< checking 'abind' .............................. PASS (a65f1e1e2d249be6) 2960568
---
> new test (hash=42e4a51e3404811e)
> checking 'show' ............................... PASS (c341f3b9fc1ff684) NA
> checking 'print' .............................. PASS (419cec4864e97478) NA
> checking 'hist' ............................... PASS (91566cadc223f9a3) 05bf2b59f2a77bb3
> checking '>' .................................. PASS (c843a337bba9a51b) 988518.9
> checking '+' .................................. PASS (5b9c39c8dde0f4ba) 1531522
> checking '/' .................................. PASS (c8eb6e9ad11ccbd8) 382880.4
> checking '*' .................................. PASS (5b9c39c8dde0f4ba) 1531522
> checking 'median' ............................. PASS (1855a565fb986239) 0.5039216
> checking 'quantile' ........................... PASS (3b22f40de65ddba9) 10.10392
> checking 'Image' .............................. PASS (42e4a51e3404811e) 765760.9
> checking 'as.Image' ........................... PASS (42e4a51e3404811e) 765760.9
> checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
> checking 'imageData' .......................... PASS (e5ac272d081a94e8) 765760.9
> checking 'imageData<-' ........................ PASS (42e4a51e3404811e) 765760.9
> checking 'as.raster' .......................... PASS (b2474ac70f11c65b) NA
> checking 'colorMode<-' ........................ PASS (659e2fc3253b48a5) 765760.9
> checking 'numberOfFrames' ..................... PASS (96180b4a6b132e65) 0.9
> checking 'getFrames' .......................... PASS (0db71a429380e045) 2ce69e3965ee85bb
> checking 'display' ............................ PASS (e02c3fc0d11fe3dd) ece292adeae37a84
> checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
> checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
> checking 'drawCircle' ......................... PASS (db43b8c94523e893) 782100.7
> checking '[' .................................. PASS (9e53ad55777f433d) 1285.273
> checking 'resize' ............................. PASS (3e691caece9a23f3) 2941770
> checking 'rotate' ............................. PASS (8445c36b57d60c5d) 1247487
> checking 'flip' ............................... PASS (a292f4134eba03ae) 661525.2
> checking 'flop' ............................... PASS (edb212fe7ec01fae) 768451.1
> checking 'translate' .......................... PASS (158cc0e28f649d32) 820434.5
> checking 'affine' ............................. PASS (3aca89b692c9110c) 22238.15
> checking 'transpose' .......................... PASS (32f4e3c321435048) 652051.4
> checking 'thresh' ............................. PASS (bf6cf9e7f1b50aa0) 382924.9
> checking 'channel' ............................ PASS (288c8c2a23d7d309) 162800.7
> checking 'otsu' ............................... PASS (2634e72eb12ab864) 0.03085937
> checking 'bwlabel' ............................ PASS (a53dfbd74180c15c) 832970.9
> checking 'colorLabels' ........................ PASS (9aea6bf69b9535b1) 5455321
> checking 'stackObjects' ....................... PASS (202a964735f173b1) 596493.9
> checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
> checking 'paintObjects' ....................... PASS (d729a9cd58722f9f) 919069.9
> checking 'rmObjects' .......................... PASS (315db6e1904a02f2) 565.9
> checking 'reenumerate' ........................ PASS (315db6e1904a02f2) 565.9
> checking 'reenumerate' ........................ PASS (a53dfbd74180c15c) 832970.9
> checking 'computeFeatures' .................... PASS (607eae59e3423025) 3988895
> checking 'computeFeatures' .................... PASS (3a766122214a21a8) cf1b0ac94ace207a
> checking 'ocontour' ........................... PASS (da840dfc876b827d) 90e46e616d6ca694
> checking 'localCurvature' ..................... PASS (744209c192ca349a) 97da7b3a7c2ec717
> checking 'normalize' .......................... PASS (fd0fb40ffb018169) 747801.4
> checking 'normalize' .......................... PASS (4b1f8e1c8e2f7bf3) 809649.2
> checking 'gblur' .............................. PASS (850f1053006670c6) 761679.3
> checking 'filter2' ............................ PASS (c6d3b7ddd80521f9) 19130329
> checking 'medianFilter' ....................... PASS (07a157a471910361) 765141.6
> checking 'equalize' ........................... PASS (0e526b3729fc6369) 705546.8
> checking 'erode' .............................. PASS (36413a22e579f0bc) 908526.9
> checking 'dilate' ............................. PASS (144e48361a76b7c4) 1072658
> checking 'opening' ............................ PASS (b7c1eac6357c6e80) 985798.9
> checking 'closing' ............................ PASS (2e4462eb216d9848) 988727.9
> checking 'whiteTopHat' ........................ PASS (9db3096e14961ab7) 3572.998
> checking 'blackTopHat' ........................ PASS (bf87d7286ea29ad9) 7139.473
> checking 'selfComplementaryTopHat' ............ PASS (b77a4b378692f404) 1533178
> checking 'distmap' ............................ PASS (f6300a4f340ae60a) 12740449
> checking 'watershed' .......................... PASS (8a9f971d0fd151b0) 988518.9
> checking 'floodFill' .......................... PASS (58b50ac20366b30b) 765755.4
> checking 'fillHull' ........................... PASS (c843a337bba9a51b) 988518.9
> checking 'propagate' .......................... PASS (c9ccd5b308eb7ef1) 26630579
> checking 'toRGB' .............................. PASS (42e4a51e3404811e) 765760.9
> checking 'rgbImage' ........................... PASS (3e4ef74fd42ad9d7) 3520680
> checking 'colormap' ........................... PASS (d2139029833173d7) 1816912
> checking 'combine' ............................ PASS (475166958acc7172) 2960568
> checking 'combine' ............................ PASS (dcd2456fbb97967f) 18119267
> checking 'tile' ............................... PASS (da0d33a63c42b563) 33061491
> checking 'untile' ............................. PASS (3268a8970f502c72) 27788327
> checking 'abind' .............................. PASS (6fd94295b094e0dd) 2960568
557,628c554,625
< new test (hash=3884fe38962577a7)
< checking 'show' ............................... PASS (8331bd653405c3be) NA
< checking 'print' .............................. PASS (de22d3dc188680fd) NA
< checking 'hist' ............................... PASS (10b008981f19c77a) 3ba2c54847ff49ff
< checking '>' .................................. PASS (e6c8a64e9fff6055) 1058553
< checking '+' .................................. PASS (5bb860f09b56b4d9) 4072301
< checking '/' .................................. PASS (17b2c344ff60cf34) 1018075
< checking '*' .................................. PASS (5bb860f09b56b4d9) 4072301
< checking 'median' ............................. PASS (a9ae52973fed588b) 0.2333333
< checking 'quantile' ........................... PASS (e51be80ed6288f06) 7.280392
< checking 'Image' .............................. PASS (3884fe38962577a7) 2036151
< checking 'as.Image' ........................... PASS (3884fe38962577a7) 2036151
< checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
< checking 'imageData' .......................... PASS (1456dcb0ab2d690b) 2036151
< checking 'imageData<-' ........................ PASS (3884fe38962577a7) 2036151
< checking 'as.raster' .......................... PASS (abd1d3d0d6329777) NA
< checking 'colorMode<-' ........................ PASS (0aa63faa9d4e0838) 2036151
< checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
< checking 'getFrames' .......................... PASS (2ed277d7e69a05d2) 1750981548e81a00
< checking 'display' ............................ PASS (3d646d4f07d194ba) e7aad486cf864763
< checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
< checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
< checking 'drawCircle' ......................... PASS (5175a6622762681a) 2049936
< checking '[' .................................. PASS (c60784a663dd1761) 9950.096
< checking 'resize' ............................. PASS (fe9aa55b037def9d) 15155777
< checking 'rotate' ............................. PASS (2a6f5001ae7d116d) 4525312
< checking 'flip' ............................... PASS (192932ac94cae831) 1977928
< checking 'flop' ............................... PASS (55c97a05ee9ed805) 2048664
< checking 'translate' .......................... PASS (c866b3232cda2c68) 2998417
< checking 'affine' ............................. PASS (517c3559acf97cf4) 226067.6
< checking 'transpose' .......................... PASS (e6349d8cc35ed017) 1907377
< checking 'thresh' ............................. PASS (e98d9e4246c476a4) 954376.9
< checking 'channel' ............................ PASS (84d92148a5eda650) 257578.5
< checking 'otsu' ............................... PASS (6a2131f538a2a53e) 0.3316406
< checking 'bwlabel' ............................ PASS (2fa4cf414bbb7787) 230329.9
< checking 'colorLabels' ........................ PASS (b71e0c0d93c0ba5d) 1920855
< checking 'stackObjects' ....................... PASS (f30668520190ffed) 712799.6
< checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
< checking 'paintObjects' ....................... PASS (6a1ba970169d82ad) 2090128
< checking 'rmObjects' .......................... PASS (3705fc84a07dd0cd) -0.1
< checking 'reenumerate' ........................ PASS (3705fc84a07dd0cd) -0.1
< checking 'reenumerate' ........................ PASS (2fa4cf414bbb7787) 230329.9
< checking 'computeFeatures' .................... PASS (10c741c6898b4b96) 746878.2
< checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 9bc95f30143c0aa0
< checking 'ocontour' ........................... PASS (1be2808a87ee437f) 8a1eb9f0654f5114
< checking 'localCurvature' ..................... PASS (ad1fddb421e46506) 63cee8a66ce4e24c
< checking 'normalize' .......................... PASS (edb5f31f14cd540d) 1788995
< checking 'normalize' .......................... PASS (6a1005a2ed478c1e) 1858155
< checking 'gblur' .............................. PASS (c61849c1f4dc6d25) 2029979
< checking 'filter2' ............................ PASS (760ded68d0c55bfa) 50878763
< checking 'medianFilter' ....................... PASS (0b06f73d5aecad7d) 2034604
< checking 'equalize' ........................... PASS (2d4d0558bb48cbfc) 2942981
< checking 'erode' .............................. PASS (94112a39c70cd747) 830816.9
< checking 'dilate' ............................. PASS (a9fbe5f3b81787ec) 1339263
< checking 'opening' ............................ PASS (957aea2990d2caa1) 1013295
< checking 'closing' ............................ PASS (7af64e74f8e80dbb) 1069405
< checking 'whiteTopHat' ........................ PASS (d50f6d3e0e26602d) 16585.63
< checking 'blackTopHat' ........................ PASS (310953bdffbb07ee) 22039.05
< checking 'selfComplementaryTopHat' ............ PASS (dfefa629c102a00d) 4071763
< checking 'distmap' ............................ PASS (6c03a6a34b67eec0) 6038778
< checking 'watershed' .......................... PASS (61ebc564dd827878) 1058553
< checking 'floodFill' .......................... PASS (f537dd1499704563) 2036854
< checking 'fillHull' ........................... PASS (e6c8a64e9fff6055) 1058553
< checking 'propagate' .......................... PASS (7b81c961226b8218) 7755487
< checking 'toRGB' .............................. PASS (3884fe38962577a7) 2036151
< checking 'rgbImage' ........................... PASS (43e895266c1b7cae) 7617867
< checking 'colormap' ........................... PASS (972e374a8a23c0e1) 1657338
< checking 'combine' ............................ PASS (d56bf3140c7cd055) 8350133
< checking 'combine' ............................ PASS (b21bd2c702883543) 52959073
< checking 'tile' ............................... PASS (4f60a4ae167b4e6e) 107188639
< checking 'untile' ............................. PASS (05afb65e638c5769) 97994583
< checking 'abind' .............................. PASS (d56bf3140c7cd055) 8350133
---
> new test (hash=de81d0d989193946)
> checking 'show' ............................... PASS (2e8e7d2423e3ccfe) NA
> checking 'print' .............................. PASS (6ab730d47def3609) NA
> checking 'hist' ............................... PASS (6a57fc1cd042ba00) 65b5b051743defa8
> checking '>' .................................. PASS (53e61ab2bda88b20) 1058553
> checking '+' .................................. PASS (bfc8079a28d79b4c) 4072301
> checking '/' .................................. PASS (b55c46146fdfe46d) 1018075
> checking '*' .................................. PASS (bfc8079a28d79b4c) 4072301
> checking 'median' ............................. PASS (1bc9c6651e4507c8) 0.2333333
> checking 'quantile' ........................... PASS (686379af319f166a) 7.280392
> checking 'Image' .............................. PASS (de81d0d989193946) 2036151
> checking 'as.Image' ........................... PASS (de81d0d989193946) 2036151
> checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
> checking 'imageData' .......................... PASS (cc315d22f9180202) 2036151
> checking 'imageData<-' ........................ PASS (de81d0d989193946) 2036151
> checking 'as.raster' .......................... PASS (9f57220e155de221) NA
> checking 'colorMode<-' ........................ PASS (908b90694e179a06) 2036151
> checking 'numberOfFrames' ..................... PASS (96180b4a6b132e65) 0.9
> checking 'getFrames' .......................... PASS (1d27d730987b7a26) 8e44d4ba87d4aa02
> checking 'display' ............................ PASS (0a11225efa5072ae) df8baf2e444e61aa
> checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
> checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
> checking 'drawCircle' ......................... PASS (7dca62c4ac89e623) 2049936
> checking '[' .................................. PASS (c393e7deb8110d2e) 9950.096
> checking 'resize' ............................. PASS (75a7216227f8dbfa) 15155777
> checking 'rotate' ............................. PASS (cba5275a49d1c025) 4525312
> checking 'flip' ............................... PASS (ce5674ff635ed106) 1977928
> checking 'flop' ............................... PASS (c9a027c754ade888) 2048664
> checking 'translate' .......................... PASS (98b2270654265063) 2998417
> checking 'affine' ............................. PASS (091470a40c4fba44) 226067.6
> checking 'transpose' .......................... PASS (2a083c731f2328d6) 1907377
> checking 'thresh' ............................. PASS (aeb34a5300761161) 954376.9
> checking 'channel' ............................ PASS (628995dc542023b6) 257578.5
> checking 'otsu' ............................... PASS (a7933cc16292d271) 0.3316406
> checking 'bwlabel' ............................ PASS (f8bd68974c926eec) 230329.9
> checking 'colorLabels' ........................ PASS (80dc35afde7d79d4) 1920855
> checking 'stackObjects' ....................... PASS (6f9fa1b0c36f14c3) 712799.6
> checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
> checking 'paintObjects' ....................... PASS (1812b3a1be6f2a21) 2090128
> checking 'rmObjects' .......................... PASS (cf00ced5df055ef3) -0.1
> checking 'reenumerate' ........................ PASS (cf00ced5df055ef3) -0.1
> checking 'reenumerate' ........................ PASS (f8bd68974c926eec) 230329.9
> checking 'computeFeatures' .................... PASS (f17bea67c6db8efa) 746878.2
> checking 'computeFeatures' .................... PASS (6dc4c63dde7e7828) 32d95b1456f80f68
> checking 'ocontour' ........................... PASS (62edd8045dda1043) 91bbaa639ef2cb55
> checking 'localCurvature' ..................... PASS (9ddeedd40b4e5c7b) a2c60afaa6d43988
> checking 'normalize' .......................... PASS (0b70467017a902ca) 1788995
> checking 'normalize' .......................... PASS (95a2f0d3d09f9593) 1858155
> checking 'gblur' .............................. PASS (220352a03dba8eda) 2029979
> checking 'filter2' ............................ PASS (4ca91f0d9cb2a1e9) 50878763
> checking 'medianFilter' ....................... PASS (afb4863b9d632271) 2034604
> checking 'equalize' ........................... PASS (6d80d436cf8278ec) 2942981
> checking 'erode' .............................. PASS (86fbc1458f72ebfe) 830816.9
> checking 'dilate' ............................. PASS (fffa10444677a5de) 1339263
> checking 'opening' ............................ PASS (2502c3f605bf79f2) 1013295
> checking 'closing' ............................ PASS (16dfffda0eb72d6d) 1069405
> checking 'whiteTopHat' ........................ PASS (ab977dc4ab166626) 16585.63
> checking 'blackTopHat' ........................ PASS (e1f6d9987bffb784) 22039.05
> checking 'selfComplementaryTopHat' ............ PASS (37e1c11a042ce219) 4071763
> checking 'distmap' ............................ PASS (046048efe2665db2) 6038778
> checking 'watershed' .......................... PASS (5810b16b06c7a236) 1058553
> checking 'floodFill' .......................... PASS (87ccae676293e02d) 2036854
> checking 'fillHull' ........................... PASS (53e61ab2bda88b20) 1058553
> checking 'propagate' .......................... PASS (50fd5efe0e56a631) 7755487
> checking 'toRGB' .............................. PASS (de81d0d989193946) 2036151
> checking 'rgbImage' ........................... PASS (cab54e5b08f3aae8) 7617867
> checking 'colormap' ........................... PASS (1844757fe6d6692b) 1657338
> checking 'combine' ............................ PASS (07952012d019c893) 8350133
> checking 'combine' ............................ PASS (8cb162a59398a20b) 52959073
> checking 'tile' ............................... PASS (498539964fb48dd4) 107188639
> checking 'untile' ............................. PASS (9fb04cc414930cc6) 97994583
> checking 'abind' .............................. PASS (07952012d019c893) 8350133
640,711c637,708
< new test (hash=db12fa8044d98567)
< checking 'show' ............................... PASS (75018abdcca926f0) NA
< checking 'print' .............................. PASS (9bacee8faec96053) NA
< checking 'hist' ............................... PASS (f0f3640c0aa89c38) 8a0ff1615bea3b3b
< checking '>' .................................. PASS (db12fa8044d98567) 1055560
< checking '+' .................................. PASS (0b5a21f5cc627e62) 2111120
< checking '/' .................................. PASS (bf2545eee0c6aa3e) 527779.9
< checking '*' .................................. PASS (0b5a21f5cc627e62) 2111120
< checking 'median' ............................. PASS (8396e8397399bb05) -0.1
< checking 'quantile' ........................... PASS (130a179fb028f1a7) 8.9
< checking 'Image' .............................. PASS (041d3981bcab3129) 1055560
< checking 'as.Image' ........................... PASS (db12fa8044d98567) 1055560
< checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
< checking 'imageData' .......................... PASS (6b02d87cd459ac19) 1055560
< checking 'imageData<-' ........................ PASS (db12fa8044d98567) 1055560
< checking 'as.raster' .......................... PASS (26cf978328d1a712) NA
< checking 'colorMode<-' ........................ PASS (db12fa8044d98567) 1055560
< checking 'numberOfFrames' ..................... PASS (161e41d6aa749739) 1.9
< checking 'getFrames' .......................... PASS (ce29246f73d959c3) 34b1f972b2556640
< checking 'display' ............................ PASS (2fb2fcab54a4ea5a) a59a5509e2da96ec
< checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
< checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
< checking 'drawCircle' ......................... PASS (1180c20b46fdaf4e) 1656514
< checking '[' .................................. PASS (2a55f6dafc492b42) 1889.9
< checking 'resize' ............................. PASS (211e86386b1010af) 9108608
< checking 'rotate' ............................. PASS (d67e39e3cb07d275) 1600126
< checking 'flip' ............................... PASS (fbb2a6f78f2cc7f1) 714439.9
< checking 'flop' ............................... PASS (f6825dda37058381) 1064092
< checking 'translate' .......................... PASS (8d027c3127938636) 1105982
< checking 'affine' ............................. PASS (a6e552f84324fe21) 133467.8
< checking 'transpose' .......................... PASS (eeeb148d04107340) 758083.9
< checking 'thresh' ............................. PASS (5b7b2d141f385123) 824497.9
< checking 'channel' ............................ PASS (db12fa8044d98567) 1055560
< checking 'otsu' ............................... PASS (69c60dc99d5066e3) 1.4
< checking 'bwlabel' ............................ PASS (10092f8e4256496b) 1597368
< checking 'colorLabels' ........................ PASS (ebf6961f64378f97) 5485361
< checking 'stackObjects' ....................... PASS (d1d99850ff4d6d38) 8889538
< checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
< checking 'paintObjects' ....................... PASS (8c5ef6f490aa8762) 834266.6
< checking 'rmObjects' .......................... PASS (0a1cd72f8d3c03e8) 1303423
< checking 'reenumerate' ........................ PASS (df75276eeec5813d) 1244828
< checking 'reenumerate' ........................ PASS (10092f8e4256496b) 1597368
< checking 'computeFeatures' .................... PASS (6f8fccf9be44bfef) 416109350
< checking 'computeFeatures' .................... PASS (4e7e75f941531854) 162981db75daaae7
< checking 'ocontour' ........................... PASS (9f7d90d6312e32f3) 520feefec500ade4
< checking 'localCurvature' ..................... PASS (477746e4fee34aeb) 173b754e552dc94a
< checking 'normalize' .......................... PASS (eea76285d45436f7) 1055560
< checking 'normalize' .......................... PASS (eea76285d45436f7) 1055560
< checking 'gblur' .............................. PASS (bd9e6638aeecda72) 1037581
< checking 'filter2' ............................ PASS (448257eb6e58efb1) 26149148
< checking 'medianFilter' ....................... PASS (ed8d722e63a36a34) 1030730
< checking 'equalize' ........................... PASS (eea76285d45436f7) 1055560
< checking 'erode' .............................. PASS (54ccd3aba098da92) 617311.9
< checking 'dilate' ............................. PASS (3f0aed5a551e26b5) 1591594
< checking 'opening' ............................ PASS (ae3c29b4498904c5) 861145.9
< checking 'closing' ............................ PASS (2e26e13058dee387) 1188258
< checking 'whiteTopHat' ........................ PASS (28bbffedc1bcb297) 148131.9
< checking 'blackTopHat' ........................ PASS (a862285882d4249e) 202411.9
< checking 'selfComplementaryTopHat' ............ PASS (92483d40b14844db) 2151192
< checking 'distmap' ............................ PASS (766610b2223767b0) 3856630
< checking 'watershed' .......................... PASS (eaba5359a5afa00e) 1443978
< checking 'floodFill' .......................... PASS (0db2bbd3a6d9a773) 2057384
< checking 'fillHull' ........................... PASS (ccded36693237a0e) 1096352
< checking 'propagate' .......................... PASS (e3c3ba3dd998f78f) 1613920
< checking 'toRGB' .............................. PASS (a594b4f9b88125f1) 8499672
< checking 'rgbImage' ........................... PASS (172b07d65c57f496) 4777616
< checking 'colormap' ........................... PASS (a6b9bc2f3472cbee) 10283526
< checking 'combine' ............................ PASS (f13e4c8ca8445cd0) 3888784
< checking 'combine' ............................ PASS (d8a9b6cf082a9146) 23054440
< checking 'tile' ............................... PASS (4c3d7086d0c2c786) 48846817
< checking 'untile' ............................. PASS (65365043e983ec58) 41221063
< checking 'abind' .............................. PASS (af0697002f77c709) 3888784
---
> new test (hash=45775cc98ccde7d0)
> checking 'show' ............................... PASS (17bd08c197d327bf) NA
> checking 'print' .............................. PASS (86a9e2802088f094) NA
> checking 'hist' ............................... PASS (b67b7652db932932) e392832c9ac4ef1a
> checking '>' .................................. PASS (45775cc98ccde7d0) 1055560
> checking '+' .................................. PASS (a808c74d4b8f4b1a) 2111120
> checking '/' .................................. PASS (050916ceba989d59) 527779.9
> checking '*' .................................. PASS (a808c74d4b8f4b1a) 2111120
> checking 'median' ............................. PASS (f5699b21f198d2c3) -0.1
> checking 'quantile' ........................... PASS (abb46cc6fe827b1e) 8.9
> checking 'Image' .............................. PASS (5644736cfb4b41de) 1055560
> checking 'as.Image' ........................... PASS (45775cc98ccde7d0) 1055560
> checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
> checking 'imageData' .......................... PASS (a8595646a000f9e9) 1055560
> checking 'imageData<-' ........................ PASS (45775cc98ccde7d0) 1055560
> checking 'as.raster' .......................... PASS (35debdd5bd091cf6) NA
> checking 'colorMode<-' ........................ PASS (45775cc98ccde7d0) 1055560
> checking 'numberOfFrames' ..................... PASS (0cd27cfa5ab0714e) 1.9
> checking 'getFrames' .......................... PASS (8c50f91fce805fce) df388a91608fa45d
> checking 'display' ............................ PASS (a69f9d95f70d6b4f) 2ed798e15d730f30
> checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
> checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
> checking 'drawCircle' ......................... PASS (a54d00e6ec30cdaa) 1656514
> checking '[' .................................. PASS (43978c7896f345b7) 1889.9
> checking 'resize' ............................. PASS (b189246d26913306) 9108608
> checking 'rotate' ............................. PASS (a4a84e73999cd629) 1600126
> checking 'flip' ............................... PASS (3705f945c5050495) 714439.9
> checking 'flop' ............................... PASS (91665fdcc5d39ce2) 1064092
> checking 'translate' .......................... PASS (6c5b0b16cf2595ee) 1105982
> checking 'affine' ............................. PASS (4a6b1cf59de37216) 133467.8
> checking 'transpose' .......................... PASS (9be0ad64c90eabc7) 758083.9
> checking 'thresh' ............................. PASS (cf8b639ee5c91bd5) 824497.9
> checking 'channel' ............................ PASS (45775cc98ccde7d0) 1055560
> checking 'otsu' ............................... PASS (9966633498a5e2d8) 1.4
> checking 'bwlabel' ............................ PASS (a00294e8900f15eb) 1597368
> checking 'colorLabels' ........................ PASS (6dc0e9def8039903) 3525827
> checking 'stackObjects' ....................... PASS (8ddf2c694201cbf1) 8889538
> checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
> checking 'paintObjects' ....................... PASS (f4107fd743a22ecf) 834266.6
> checking 'rmObjects' .......................... PASS (07bc253bd936adb5) 1303423
> checking 'reenumerate' ........................ PASS (ff441c512995c200) 1244828
> checking 'reenumerate' ........................ PASS (a00294e8900f15eb) 1597368
> checking 'computeFeatures' .................... PASS (1d847743be56e5a7) 416164140
> checking 'computeFeatures' .................... PASS (3a766122214a21a8) cf1b0ac94ace207a
> checking 'ocontour' ........................... PASS (cdb0d0c07c1e0775) b86c6546ddbffb2d
> checking 'localCurvature' ..................... PASS (4c13330f1d7fcbd6) 4805cb6e9d47da01
> checking 'normalize' .......................... PASS (a34cd51357995e04) 1055560
> checking 'normalize' .......................... PASS (a34cd51357995e04) 1055560
> checking 'gblur' .............................. PASS (f499c36c42da96ae) 1037581
> checking 'filter2' ............................ PASS (e5a3d2e924e050fe) 26149148
> checking 'medianFilter' ....................... PASS (ff54de12f77d64e5) 1030730
> checking 'equalize' ........................... PASS (a34cd51357995e04) 1055560
> checking 'erode' .............................. PASS (87a98696219eeb40) 617311.9
> checking 'dilate' ............................. PASS (49a5f7a8063bdcc8) 1591594
> checking 'opening' ............................ PASS (557cd0af78bc3bbe) 861145.9
> checking 'closing' ............................ PASS (04eefe7f21e9b36a) 1188258
> checking 'whiteTopHat' ........................ PASS (0a2dbcdbb9e396a8) 148131.9
> checking 'blackTopHat' ........................ PASS (af7e8fad58a0f587) 202411.9
> checking 'selfComplementaryTopHat' ............ PASS (729954d933215c8d) 2151192
> checking 'distmap' ............................ PASS (8ba0b0fb6770e8a3) 3856630
> checking 'watershed' .......................... PASS (0bd6a31bc6197067) 1443978
> checking 'floodFill' .......................... PASS (7a8a06c4be73e522) 2057384
> checking 'fillHull' ........................... PASS (d3904950b8acdb73) 1096352
> checking 'propagate' .......................... PASS (6c610fe4376714f6) 1613920
> checking 'toRGB' .............................. PASS (57b9a77f5a12af4f) 8499672
> checking 'rgbImage' ........................... PASS (82e9189e21600e37) 4777616
> checking 'colormap' ........................... PASS (244a6e10e928fb5e) 10283526
> checking 'combine' ............................ PASS (fbb690c6993fed59) 3888784
> checking 'combine' ............................ PASS (db4c289138cad595) 23054440
> checking 'tile' ............................... PASS (b5d61ba1e08ccf53) 48846817
> checking 'untile' ............................. PASS (f740856c06d69a15) 41221063
> checking 'abind' .............................. PASS (dca1271130f49d13) 3888784
722,793c719,790
< new test (hash=290d7a45d7468e5f)
< checking 'show' ............................... PASS (78a7303aa046067b) NA
< checking 'print' .............................. PASS (9aaf686697ac72be) NA
< checking 'hist' ............................... PASS (b01a7d139c82f457) c7b6d9da8efb0d2a
< checking '>' .................................. PASS (1f65757da86f51b3) 2013322
< checking '+' .................................. PASS (86bdea7870f6d0cc) 4709417
< checking '/' .................................. PASS (c3533150260f42c4) 1177354
< checking '*' .................................. PASS (86bdea7870f6d0cc) 4709417
< checking 'median' ............................. PASS (06af3e4c86ccda6d) 0.3823529
< checking 'quantile' ........................... PASS (11ef7960975f6975) 8.139216
< checking 'Image' .............................. PASS (290d7a45d7468e5f) 2354709
< checking 'as.Image' ........................... PASS (290d7a45d7468e5f) 2354709
< checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
< checking 'imageData' .......................... PASS (1936bbf08b457bab) 2354709
< checking 'imageData<-' ........................ PASS (290d7a45d7468e5f) 2354709
< checking 'as.raster' .......................... PASS (da1c028f359bf00b) NA
< checking 'colorMode<-' ........................ PASS (7856ef3bde7528ce) 2354709
< checking 'numberOfFrames' ..................... PASS (161e41d6aa749739) 1.9
< checking 'getFrames' .......................... PASS (f0d9427233f46fbb) 925d92c4efbf7653
< checking 'display' ............................ PASS (bc877f5317c575b2) 9f608546948d6759
< checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
< checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
< checking 'drawCircle' ......................... PASS (ad8f0dc0cad6885c) 2650006
< checking '[' .................................. PASS (144b12c39a99e2bc) 40701.82
< checking 'resize' ............................. PASS (dd96ecc9ed75e744) 76725662
< checking 'rotate' ............................. PASS (19319de30582c1d6) 4140744
< checking 'flip' ............................... PASS (91c7918c52fe8718) 2309692
< checking 'flop' ............................... PASS (49ae0fb3bef587c5) 2358658
< checking 'translate' .......................... PASS (a8fcd75113ffb2d2) 3393923
< checking 'affine' ............................. PASS (592877c7d17e1d22) 301692.6
< checking 'transpose' .......................... PASS (a42245132dbea662) 2303263
< checking 'thresh' ............................. PASS (167470821b508c29) 1549362
< checking 'channel' ............................ PASS (d4dd2cc593776db0) 287206.2
< checking 'otsu' ............................... PASS (2ff953970aa01423) 1.370703
< checking 'bwlabel' ............................ PASS (404699231a09f479) 360413.9
< checking 'colorLabels' ........................ PASS (4742967f9e3ced6e) 3039066
< checking 'stackObjects' ....................... PASS (71587dec63927412) 2472601
< checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
< checking 'paintObjects' ....................... PASS (0daa597dbe10a6cd) 2558300
< checking 'rmObjects' .......................... PASS (ea36bf2e51776461) 261782.9
< checking 'reenumerate' ........................ PASS (ea36bf2e51776461) 261782.9
< checking 'reenumerate' ........................ PASS (404699231a09f479) 360413.9
< checking 'computeFeatures' .................... PASS (157a5f036e189a0a) 749353.1
< checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 9bc95f30143c0aa0
< checking 'ocontour' ........................... PASS (20fad83d539e2372) 9d7964011e11a9be
< checking 'localCurvature' ..................... PASS (469cd750daa03946) 88419614c38ea083
< checking 'normalize' .......................... PASS (4484b1dbbf34c675) 2693244
< checking 'normalize' .......................... PASS (27680837000f1ded) 2315924
< checking 'gblur' .............................. PASS (fc2147343f5faed5) 2349701
< checking 'filter2' ............................ PASS (958b84b9c0054384) 58841710
< checking 'medianFilter' ....................... PASS (8ccc036255fe88d9) 2352447
< checking 'equalize' ........................... PASS (e7f99b2a8483f2d3) 2616480
< checking 'erode' .............................. PASS (16554ca32b165307) 1547948
< checking 'dilate' ............................. PASS (560c069e5292fdc9) 2604996
< checking 'opening' ............................ PASS (592d8ab4156490aa) 1919386
< checking 'closing' ............................ PASS (c57a6175329f5e45) 2038196
< checking 'whiteTopHat' ........................ PASS (6938d64e59a77fe1) 12437.36
< checking 'blackTopHat' ........................ PASS (8fbaad8a000d91c5) 19780.97
< checking 'selfComplementaryTopHat' ............ PASS (b11bd64d03fe29b9) 4711722
< checking 'distmap' ............................ PASS (708df2d4560d23a7) 10836360
< checking 'watershed' .......................... PASS (4aa1432f01914277) 2013322
< checking 'floodFill' .......................... PASS (02926422d15cf3c2) 2355706
< checking 'fillHull' ........................... PASS (1f65757da86f51b3) 2013322
< checking 'propagate' .......................... PASS (1656991af484107e) 11618104
< checking 'toRGB' .............................. PASS (290d7a45d7468e5f) 2354709
< checking 'rgbImage' ........................... PASS (98de7e0def0bab8b) 12071186
< checking 'colormap' ........................... PASS (0798dea20c907720) 2273276
< checking 'combine' ............................ PASS (579971440faf3f11) 9516503
< checking 'combine' ............................ PASS (fb7944257dfefb91) 59844403
< checking 'tile' ............................... PASS (e594265685cdf3aa) 114300809
< checking 'untile' ............................. PASS (5b25f3b7fc0df1b3) 105862114
< checking 'abind' .............................. PASS (a413703585d2e713) 9516503
---
> new test (hash=7b41d26d4354fed1)
> checking 'show' ............................... PASS (0e20a4fb07853778) NA
> checking 'print' .............................. PASS (0b3e2b71e556d7a8) NA
> checking 'hist' ............................... PASS (7266d20001b63e05) 48ff490a50be36d5
> checking '>' .................................. PASS (5a6494dd882e20ae) 2013322
> checking '+' .................................. PASS (78d490385e4c68e5) 4709417
> checking '/' .................................. PASS (98087f12b7f61f2d) 1177354
> checking '*' .................................. PASS (78d490385e4c68e5) 4709417
> checking 'median' ............................. PASS (fdd3c9a35d83db2f) 0.3823529
> checking 'quantile' ........................... PASS (e26e9f3ec19dd1e9) 8.139216
> checking 'Image' .............................. PASS (7b41d26d4354fed1) 2354709
> checking 'as.Image' ........................... PASS (7b41d26d4354fed1) 2354709
> checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
> checking 'imageData' .......................... PASS (242db37f6093cb73) 2354709
> checking 'imageData<-' ........................ PASS (7b41d26d4354fed1) 2354709
> checking 'as.raster' .......................... PASS (b47cd18dd737d179) NA
> checking 'colorMode<-' ........................ PASS (739b8cc774a94061) 2354709
> checking 'numberOfFrames' ..................... PASS (0cd27cfa5ab0714e) 1.9
> checking 'getFrames' .......................... PASS (dfada18bf7486f49) 6bccd3af078885b1
> checking 'display' ............................ PASS (713161e915733541) bcf32094ce1d3dd4
> checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
> checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
> checking 'drawCircle' ......................... PASS (516ff89688aa090a) 2650006
> checking '[' .................................. PASS (b7ab984ac4c76be7) 40701.82
> checking 'resize' ............................. PASS (19f045e2a12c3dcd) 76725662
> checking 'rotate' ............................. PASS (5ca7d358dc5f6cb8) 4140744
> checking 'flip' ............................... PASS (ec438fa29adb6692) 2309692
> checking 'flop' ............................... PASS (189be924d5127b6d) 2358658
> checking 'translate' .......................... PASS (6b8b9dffcab202c5) 3393923
> checking 'affine' ............................. PASS (8490fa9d387d7f22) 301692.6
> checking 'transpose' .......................... PASS (f415a850f96da517) 2303263
> checking 'thresh' ............................. PASS (96c1db8a6b3c5f8f) 1549362
> checking 'channel' ............................ PASS (d0059f4eaa729cb0) 287206.2
> checking 'otsu' ............................... PASS (18794185be6d9049) 1.370703
> checking 'bwlabel' ............................ PASS (cf48a1553a7ca557) 360413.9
> checking 'colorLabels' ........................ PASS (87aec3caedd0f2b2) 3039066
> checking 'stackObjects' ....................... PASS (6c9d66add9231c0b) 2472601
> checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
> checking 'paintObjects' ....................... PASS (a94d303375c85afc) 2558300
> checking 'rmObjects' .......................... PASS (3c7c32b7c14bf399) 261782.9
> checking 'reenumerate' ........................ PASS (3c7c32b7c14bf399) 261782.9
> checking 'reenumerate' ........................ PASS (cf48a1553a7ca557) 360413.9
> checking 'computeFeatures' .................... PASS (43ed64a6574660f3) 749353.1
> checking 'computeFeatures' .................... PASS (6dc4c63dde7e7828) 32d95b1456f80f68
> checking 'ocontour' ........................... PASS (0cc37fb8be6a9150) a8ef8364446f767a
> checking 'localCurvature' ..................... PASS (91ac6bafe7f8c008) feedc85342708fe9
> checking 'normalize' .......................... PASS (6f82aae3b180c153) 2693244
> checking 'normalize' .......................... PASS (27441d4baba7c727) 2315924
> checking 'gblur' .............................. PASS (6317c51db4b2e332) 2349701
> checking 'filter2' ............................ PASS (ff5a03c8be20359c) 58841710
> checking 'medianFilter' ....................... PASS (08a067834027edb5) 2352447
> checking 'equalize' ........................... PASS (02d6a459ef536ba0) 2616480
> checking 'erode' .............................. PASS (c065e093042fa687) 1547948
> checking 'dilate' ............................. PASS (3ad67b8d06ebb303) 2604996
> checking 'opening' ............................ PASS (789077961fab1b84) 1919386
> checking 'closing' ............................ PASS (930601017e06bf69) 2038196
> checking 'whiteTopHat' ........................ PASS (248102e12cde390f) 12437.36
> checking 'blackTopHat' ........................ PASS (2769c6f876a888b2) 19780.97
> checking 'selfComplementaryTopHat' ............ PASS (535e331642e8affe) 4711722
> checking 'distmap' ............................ PASS (e9f6f8a5899a40fd) 10836360
> checking 'watershed' .......................... PASS (355196749445c942) 2013322
> checking 'floodFill' .......................... PASS (a23cce6e67e088ae) 2355706
> checking 'fillHull' ........................... PASS (5a6494dd882e20ae) 2013322
> checking 'propagate' .......................... PASS (6a54d058269b4352) 11618104
> checking 'toRGB' .............................. PASS (7b41d26d4354fed1) 2354709
> checking 'rgbImage' ........................... PASS (05d03bf83df83dbf) 12071186
> checking 'colormap' ........................... PASS (40f159a4fec5a5e4) 2273276
> checking 'combine' ............................ PASS (943e696dd062479b) 9516503
> checking 'combine' ............................ PASS (5b2b6f0a51b05e18) 59844403
> checking 'tile' ............................... PASS (853d179912a1e6b9) 114300809
> checking 'untile' ............................. PASS (92a5de5886618db5) 105862114
> checking 'abind' .............................. PASS (26faa8168a99c898) 9516503
804,875c801,872
< new test (hash=2a321f78219fa026)
< checking 'show' ............................... PASS (3de182583a8c2cf2) NA
< checking 'print' .............................. PASS (05d1cebf84274f35) NA
< checking 'hist' ............................... PASS (885aba01ae2954f5) c984b74f904ca3b0
< checking '>' .................................. PASS (c15b137f0122c2ee) 1541186
< checking '+' .................................. PASS (2951b29fcfadda51) 4466272
< checking '/' .................................. PASS (b0a06579c4ef390d) 1116568
< checking '*' .................................. PASS (2951b29fcfadda51) 4466272
< checking 'median' ............................. PASS (06af3e4c86ccda6d) 0.3823529
< checking 'quantile' ........................... PASS (11ef7960975f6975) 8.139216
< checking 'Image' .............................. PASS (e6ae9fe3a69fec2c) 2233136
< checking 'as.Image' ........................... PASS (2a321f78219fa026) 2233136
< checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
< checking 'imageData' .......................... PASS (6a221a6a2cec815a) 2233136
< checking 'imageData<-' ........................ PASS (2a321f78219fa026) 2233136
< checking 'as.raster' .......................... PASS (73a5fd711e0edd14) NA
< checking 'colorMode<-' ........................ PASS (2a321f78219fa026) 2233136
< checking 'numberOfFrames' ..................... PASS (d9914b6bdfe88a1d) 5.9
< checking 'getFrames' .......................... PASS (c2a08dc890b333e2) f6e9a5d38142a455
< checking 'display' ............................ PASS (d28e3e75eed04056) c204a94517b6e86e
< checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
< checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
< checking 'drawCircle' ......................... PASS (d4dbcf7b516a28b0) 2502013
< checking '[' .................................. PASS (efc391fc4ded377e) 41200.75
< checking 'resize' ............................. PASS (5ab5e219e21b7d77) 72772706
< checking 'rotate' ............................. PASS (5ea8cc41d39fe2c4) 3978266
< checking 'flip' ............................... PASS (2578de2eb711ac89) 2296325
< checking 'flop' ............................... PASS (c21acaf425029919) 2231772
< checking 'translate' .......................... PASS (74e4014bf39793e1) 3827517
< checking 'affine' ............................. PASS (76f6b18d2cb7c9c2) 219714.6
< checking 'transpose' .......................... PASS (3b5dcc82ff30daf8) 2284582
< checking 'thresh' ............................. PASS (3a92d48cd68a67e8) 1426674
< checking 'channel' ............................ PASS (2a321f78219fa026) 2233136
< checking 'otsu' ............................... PASS (2cdec937ebdb0543) 9.425391
< checking 'bwlabel' ............................ PASS (f698416417dde49c) 2016822
< checking 'colorLabels' ........................ PASS (b07a31035fc451d5) 15071536
< checking 'stackObjects' ....................... PASS (8e5b00026f507a11) 2575847
< checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
< checking 'paintObjects' ....................... PASS (63b2ef8ac8682f98) 2379341
< checking 'rmObjects' .......................... PASS (056669f72385f506) 1934575
< checking 'reenumerate' ........................ PASS (056669f72385f506) 1934575
< checking 'reenumerate' ........................ PASS (f698416417dde49c) 2016822
< checking 'computeFeatures' .................... PASS (cddeb53183f0a518) 734993.9
< checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 9bc95f30143c0aa0
< checking 'ocontour' ........................... PASS (3a230e30e8d15bee) bd10c4b443e2c5c0
< checking 'localCurvature' ..................... PASS (a1d19191deda947d) 315e34c611de2b7d
< checking 'normalize' .......................... PASS (85d2a91256ddfdaa) 2526618
< checking 'normalize' .......................... PASS (4accf817a36301dc) 2163958
< checking 'gblur' .............................. PASS (c2c22f114f9ac87d) 2237219
< checking 'filter2' ............................ PASS (0245e31021e7583c) 56904871
< checking 'medianFilter' ....................... PASS (24f248c2c56e7772) 2231438
< checking 'equalize' ........................... PASS (97693dcd997265d1) 2447139
< checking 'erode' .............................. PASS (5b04187576514eec) 1121204
< checking 'dilate' ............................. PASS (4897aaa0d40c4fb8) 2104588
< checking 'opening' ............................ PASS (cb86eac9754dbac1) 1451050
< checking 'closing' ............................ PASS (13b4d846ef6a77dd) 1569448
< checking 'whiteTopHat' ........................ PASS (1c856cc6a52ed865) 12004.54
< checking 'blackTopHat' ........................ PASS (f74244f5c4295d35) 20296.87
< checking 'selfComplementaryTopHat' ............ PASS (f23286411d6929f7) 4469404
< checking 'distmap' ............................ PASS (ff3b2754a2aa8eb3) 7464344
< checking 'watershed' .......................... PASS (cd9ef36f457c5d89) 1541186
< checking 'floodFill' .......................... PASS (60d288f662756f97) 2234521
< checking 'fillHull' ........................... PASS (c15b137f0122c2ee) 1541186
< checking 'propagate' .......................... PASS (503cd7ed6238770e) 8948876
< checking 'toRGB' .............................. PASS (5a32f2aceec9a146) 20279146
< checking 'rgbImage' ........................... PASS (19e0ea95d787d11c) 10796552
< checking 'colormap' ........................... PASS (62fb056f168823de) 22585273
< checking 'combine' ............................ PASS (67fe5c370ca3a18d) 8992851
< checking 'combine' ............................ PASS (41f451bdd6a63a8f) 56431472
< checking 'tile' ............................... PASS (0581a6216e8e50e0) 72664167
< checking 'untile' ............................. PASS (4e208afef7f298bd) 60048605
< checking 'abind' .............................. PASS (e3feb875241cebc2) 9273358
---
> new test (hash=ea218ca35d898b4f)
> checking 'show' ............................... PASS (07d544b61ec16bf1) NA
> checking 'print' .............................. PASS (185b486b9fcdb3b0) NA
> checking 'hist' ............................... PASS (06d171c8f173fbfa) c3d0c3b2d4df7f61
> checking '>' .................................. PASS (cdeb2538f3cc7adf) 1541186
> checking '+' .................................. PASS (9d2cb7572d822536) 4466272
> checking '/' .................................. PASS (93c6c46f0b0e7df5) 1116568
> checking '*' .................................. PASS (9d2cb7572d822536) 4466272
> checking 'median' ............................. PASS (fdd3c9a35d83db2f) 0.3823529
> checking 'quantile' ........................... PASS (e26e9f3ec19dd1e9) 8.139216
> checking 'Image' .............................. PASS (b2c89c8bd2d8cfbb) 2233136
> checking 'as.Image' ........................... PASS (ea218ca35d898b4f) 2233136
> checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
> checking 'imageData' .......................... PASS (85da79da2cd4332f) 2233136
> checking 'imageData<-' ........................ PASS (ea218ca35d898b4f) 2233136
> checking 'as.raster' .......................... PASS (f7837c7682313ed7) NA
> checking 'colorMode<-' ........................ PASS (ea218ca35d898b4f) 2233136
> checking 'numberOfFrames' ..................... PASS (ce8815ddd92a2bbb) 5.9
> checking 'getFrames' .......................... PASS (e193a8c072f9729f) feb32c3d20c02193
> checking 'display' ............................ PASS (c99fb2dbf3f4f099) 8222a6379bd22cd5
> checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
> checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
> checking 'drawCircle' ......................... PASS (2eeddc22da537d19) 2502013
> checking '[' .................................. PASS (ca2402ebe50888e9) 41200.75
> checking 'resize' ............................. PASS (c2412da2d423bb4c) 72772706
> checking 'rotate' ............................. PASS (e88e2e93ce61d959) 3978266
> checking 'flip' ............................... PASS (735ec4743ab3f0c4) 2296325
> checking 'flop' ............................... PASS (039d65e48af245d2) 2231772
> checking 'translate' .......................... PASS (6dc22f8c9da472fe) 3827517
> checking 'affine' ............................. PASS (987d2bf7d6243ac5) 219714.6
> checking 'transpose' .......................... PASS (70d09e0401597e51) 2284582
> checking 'thresh' ............................. PASS (99ef268285d31156) 1426674
> checking 'channel' ............................ PASS (ea218ca35d898b4f) 2233136
> checking 'otsu' ............................... PASS (73c8c3c1a7c3a7e0) 9.425391
> checking 'bwlabel' ............................ PASS (48a9facb579b630f) 2016822
> checking 'colorLabels' ........................ PASS (2f81d6c90e88b2d4) 14827904
> checking 'stackObjects' ....................... PASS (28c1ffc9196cbeda) 2575847
> checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
> checking 'paintObjects' ....................... PASS (ba568e37e29116fa) 2379341
> checking 'rmObjects' .......................... PASS (150895efa1acc9af) 1934575
> checking 'reenumerate' ........................ PASS (150895efa1acc9af) 1934575
> checking 'reenumerate' ........................ PASS (48a9facb579b630f) 2016822
> checking 'computeFeatures' .................... PASS (5f168ac8bf99f53d) 734993.9
> checking 'computeFeatures' .................... PASS (6dc4c63dde7e7828) 32d95b1456f80f68
> checking 'ocontour' ........................... PASS (67c938cc8c8b0a94) e0b0122d0f8dbec3
> checking 'localCurvature' ..................... PASS (14e7e43044a6edce) dbbde661d27cf4d5
> checking 'normalize' .......................... PASS (c6700c53a770f4dc) 2526618
> checking 'normalize' .......................... PASS (321165d27d376355) 2163958
> checking 'gblur' .............................. PASS (167add1590f90b31) 2237219
> checking 'filter2' ............................ PASS (288a7b9238221d38) 56904871
> checking 'medianFilter' ....................... PASS (12259cca79cae7e1) 2231438
> checking 'equalize' ........................... PASS (8a3ab1c34c6d6b46) 2447139
> checking 'erode' .............................. PASS (76903cc870b48afc) 1121204
> checking 'dilate' ............................. PASS (9a465193b3c535f1) 2104588
> checking 'opening' ............................ PASS (f27ee35968015aff) 1451050
> checking 'closing' ............................ PASS (fc6578a91384556e) 1569448
> checking 'whiteTopHat' ........................ PASS (2545dff4d9a67f18) 12004.54
> checking 'blackTopHat' ........................ PASS (0bc09ee83c3b7e6b) 20296.87
> checking 'selfComplementaryTopHat' ............ PASS (7271dd2d24a8b8fa) 4469404
> checking 'distmap' ............................ PASS (fd74d28ff7a40bc8) 7464344
> checking 'watershed' .......................... PASS (aec9e7c80b500f8a) 1541186
> checking 'floodFill' .......................... PASS (c8f6a63ecc5faeb2) 2234521
> checking 'fillHull' ........................... PASS (cdeb2538f3cc7adf) 1541186
> checking 'propagate' .......................... PASS (2fa32c86f0afbbe9) 8948876
> checking 'toRGB' .............................. PASS (7ac5c5945e1aa8b4) 20279146
> checking 'rgbImage' ........................... PASS (6c13f1c0649a1b02) 10796552
> checking 'colormap' ........................... PASS (fffb8d91ccca5f12) 22585273
> checking 'combine' ............................ PASS (61a6f7f5c6357973) 8992851
> checking 'combine' ............................ PASS (e3af2b87e81b577e) 56431472
> checking 'tile' ............................... PASS (22c39d5bf0a57b26) 72664167
> checking 'untile' ............................. PASS (f3dd10e639f40c64) 60048605
> checking 'abind' .............................. PASS (f28d70bcf3781d08) 9273358
886,957c883,954
< new test (hash=9b67f57c77f74d34)
< checking 'show' ............................... PASS (63597c3473b56977) NA
< checking 'print' .............................. PASS (1cd88fa9e1ff084e) NA
< checking 'hist' ............................... PASS (885aba01ae2954f5) c984b74f904ca3b0
< checking '>' .................................. PASS (8213f4f8b30b3c46) 1541186
< checking '+' .................................. PASS (d9da0200176ead52) 4466272
< checking '/' .................................. PASS (c5360d5612508ba0) 1116568
< checking '*' .................................. PASS (d9da0200176ead52) 4466272
< checking 'median' ............................. PASS (06af3e4c86ccda6d) 0.3823529
< checking 'quantile' ........................... PASS (11ef7960975f6975) 8.139216
< checking 'Image' .............................. PASS (e6ae9fe3a69fec2c) 2233136
< checking 'as.Image' ........................... PASS (2a321f78219fa026) 2233136
< checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
< checking 'imageData' .......................... PASS (6a221a6a2cec815a) 2233136
< checking 'imageData<-' ........................ PASS (9b67f57c77f74d34) 2233136
< checking 'as.raster' .......................... PASS (73a5fd711e0edd14) NA
< checking 'colorMode<-' ........................ PASS (9b67f57c77f74d34) 2233136
< checking 'numberOfFrames' ..................... PASS (d9914b6bdfe88a1d) 5.9
< checking 'getFrames' .......................... PASS (e9438bf3afe19fef) 5aadb4894eade0a0
< checking 'display' ............................ PASS (d28e3e75eed04056) c204a94517b6e86e
< checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
< checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
< checking 'drawCircle' ......................... PASS (88969323fe4011cb) 2502013
< checking '[' .................................. PASS (856f5f5a7828a96f) 41200.75
< checking 'resize' ............................. PASS (22d4ff5205c02f14) 72772706
< checking 'rotate' ............................. PASS (3e6dee126668bb5a) 3978266
< checking 'flip' ............................... PASS (753308a7b510662f) 2296325
< checking 'flop' ............................... PASS (1ea0c6126c86d976) 2231772
< checking 'translate' .......................... PASS (c3111aabac6df5c8) 3827517
< checking 'affine' ............................. PASS (559df6f741145f7f) 219714.6
< checking 'transpose' .......................... PASS (d9282e9071f27e10) 2284582
< checking 'thresh' ............................. PASS (b51eea6755dfd65a) 1426674
< checking 'channel' ............................ PASS (9b67f57c77f74d34) 2233136
< checking 'otsu' ............................... PASS (2cdec937ebdb0543) 9.425391
< checking 'bwlabel' ............................ PASS (edce7604823b90a7) 2016822
< checking 'colorLabels' ........................ PASS (05cf97699b52f053) 15969784
< checking 'stackObjects' ....................... PASS (bbe84601c71da500) 2575847
< checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
< checking 'paintObjects' ....................... PASS (944b58c80d127777) 2379341
< checking 'rmObjects' .......................... PASS (1ed59ae8eb61aef6) 1934575
< checking 'reenumerate' ........................ PASS (1ed59ae8eb61aef6) 1934575
< checking 'reenumerate' ........................ PASS (edce7604823b90a7) 2016822
< checking 'computeFeatures' .................... PASS (cddeb53183f0a518) 734993.9
< checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 9bc95f30143c0aa0
< checking 'ocontour' ........................... PASS (3a230e30e8d15bee) bd10c4b443e2c5c0
< checking 'localCurvature' ..................... PASS (a1d19191deda947d) 315e34c611de2b7d
< checking 'normalize' .......................... PASS (9ace81a69fc88c37) 2526618
< checking 'normalize' .......................... PASS (2a78b599de5c2ae9) 2163958
< checking 'gblur' .............................. PASS (0d226d91f7036796) 2237219
< checking 'filter2' ............................ PASS (7cb701d185d8631b) 56904871
< checking 'medianFilter' ....................... PASS (37328d9ce26ed388) 2231438
< checking 'equalize' ........................... PASS (05fc2423af12b77a) 2447139
< checking 'erode' .............................. PASS (17fcd8b3a8de8535) 1121204
< checking 'dilate' ............................. PASS (715c930769bb9119) 2104588
< checking 'opening' ............................ PASS (1ef38f55606cdbf4) 1451050
< checking 'closing' ............................ PASS (66cb111962e57366) 1569448
< checking 'whiteTopHat' ........................ PASS (66e080c20ad98021) 12004.54
< checking 'blackTopHat' ........................ PASS (c8b5fb6a0e1d3959) 20296.87
< checking 'selfComplementaryTopHat' ............ PASS (d91b85d0f726e766) 4469404
< checking 'distmap' ............................ PASS (4ced93e5efc06917) 7464344
< checking 'watershed' .......................... PASS (9c1a4d5672652853) 1541186
< checking 'floodFill' .......................... PASS (d9a38a5952fe360e) 2234521
< checking 'fillHull' ........................... PASS (8213f4f8b30b3c46) 1541186
< checking 'propagate' .......................... PASS (0731a1de5ddabcc4) 8948876
< checking 'toRGB' .............................. PASS (c62b6c6a269ea1eb) 20279146
< checking 'rgbImage' ........................... PASS (27eec26383a0bc15) 10796552
< checking 'colormap' ........................... PASS (eef6d0395d7fe0e7) 22585273
< checking 'combine' ............................ PASS (5b4994ce3c695b2e) 8992851
< checking 'combine' ............................ PASS (03e050af1c7e1af2) 56431472
< checking 'tile' ............................... PASS (db685d6eb3480813) 72664167
< checking 'untile' ............................. PASS (0e362c45443a3ec0) 60048605
< checking 'abind' .............................. PASS (add8d4baab35a5f9) 9273358
---
> new test (hash=2cd1b3ca941d0306)
> checking 'show' ............................... PASS (ce75d078eccda68c) NA
> checking 'print' .............................. PASS (e01f0947e67df522) NA
> checking 'hist' ............................... PASS (06d171c8f173fbfa) c3d0c3b2d4df7f61
> checking '>' .................................. PASS (8eb52b594f8cd22b) 1541186
> checking '+' .................................. PASS (d0da7a47899efbc4) 4466272
> checking '/' .................................. PASS (8bfccf8b88e728b0) 1116568
> checking '*' .................................. PASS (d0da7a47899efbc4) 4466272
> checking 'median' ............................. PASS (fdd3c9a35d83db2f) 0.3823529
> checking 'quantile' ........................... PASS (e26e9f3ec19dd1e9) 8.139216
> checking 'Image' .............................. PASS (b2c89c8bd2d8cfbb) 2233136
> checking 'as.Image' ........................... PASS (ea218ca35d898b4f) 2233136
> checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
> checking 'imageData' .......................... PASS (85da79da2cd4332f) 2233136
> checking 'imageData<-' ........................ PASS (2cd1b3ca941d0306) 2233136
> checking 'as.raster' .......................... PASS (f7837c7682313ed7) NA
> checking 'colorMode<-' ........................ PASS (2cd1b3ca941d0306) 2233136
> checking 'numberOfFrames' ..................... PASS (ce8815ddd92a2bbb) 5.9
> checking 'getFrames' .......................... PASS (57ddf8e1c5653fa1) 578ceb264bf8c00f
> checking 'display' ............................ PASS (c99fb2dbf3f4f099) 8222a6379bd22cd5
> checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
> checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
> checking 'drawCircle' ......................... PASS (2a6138d3f6c7cf2b) 2502013
> checking '[' .................................. PASS (21b006dc9b230591) 41200.75
> checking 'resize' ............................. PASS (d4439ccaddffedbf) 72772706
> checking 'rotate' ............................. PASS (49bab3d36db066a3) 3978266
> checking 'flip' ............................... PASS (de3315d317526bf8) 2296325
> checking 'flop' ............................... PASS (1746b768e1919758) 2231772
> checking 'translate' .......................... PASS (eb6575b71bd228cf) 3827517
> checking 'affine' ............................. PASS (6f88949e9ca0500f) 219714.6
> checking 'transpose' .......................... PASS (cae5d3f85d9a6547) 2284582
> checking 'thresh' ............................. PASS (6907f0b8232e5a87) 1426674
> checking 'channel' ............................ PASS (2cd1b3ca941d0306) 2233136
> checking 'otsu' ............................... PASS (73c8c3c1a7c3a7e0) 9.425391
> checking 'bwlabel' ............................ PASS (0cd3636f1086f354) 2016822
> checking 'colorLabels' ........................ PASS (3d06f02ad8d875a7) 16357947
> checking 'stackObjects' ....................... PASS (3dfb061836ca6d36) 2575847
> checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
> checking 'paintObjects' ....................... PASS (d0e505d3ebc1fb67) 2379341
> checking 'rmObjects' .......................... PASS (72c36fcb451899a7) 1934575
> checking 'reenumerate' ........................ PASS (72c36fcb451899a7) 1934575
> checking 'reenumerate' ........................ PASS (0cd3636f1086f354) 2016822
> checking 'computeFeatures' .................... PASS (5f168ac8bf99f53d) 734993.9
> checking 'computeFeatures' .................... PASS (6dc4c63dde7e7828) 32d95b1456f80f68
> checking 'ocontour' ........................... PASS (67c938cc8c8b0a94) e0b0122d0f8dbec3
> checking 'localCurvature' ..................... PASS (14e7e43044a6edce) dbbde661d27cf4d5
> checking 'normalize' .......................... PASS (c864fc347d3e1eec) 2526618
> checking 'normalize' .......................... PASS (b924aa1ced88d0b0) 2163958
> checking 'gblur' .............................. PASS (41001e94fa243311) 2237219
> checking 'filter2' ............................ PASS (c4dde73f4cd08626) 56904871
> checking 'medianFilter' ....................... PASS (f336aae43926dd3a) 2231438
> checking 'equalize' ........................... PASS (8aff651b4bfe1e2d) 2447139
> checking 'erode' .............................. PASS (af16c2acdfe1ce54) 1121204
> checking 'dilate' ............................. PASS (6cf3e21751061042) 2104588
> checking 'opening' ............................ PASS (e32b483b92a01e61) 1451050
> checking 'closing' ............................ PASS (39b38ac520b6b72d) 1569448
> checking 'whiteTopHat' ........................ PASS (2dfa04a48724ec36) 12004.54
> checking 'blackTopHat' ........................ PASS (70ff24813042529a) 20296.87
> checking 'selfComplementaryTopHat' ............ PASS (4e93f72a43638575) 4469404
> checking 'distmap' ............................ PASS (fb1ca8ba680de2b3) 7464344
> checking 'watershed' .......................... PASS (29d5027b84535806) 1541186
> checking 'floodFill' .......................... PASS (54aa4548fd305300) 2234521
> checking 'fillHull' ........................... PASS (8eb52b594f8cd22b) 1541186
> checking 'propagate' .......................... PASS (0d73b4f196a75014) 8948876
> checking 'toRGB' .............................. PASS (3e30f901f32391f1) 20279146
> checking 'rgbImage' ........................... PASS (7265edee83ee6475) 10796552
> checking 'colormap' ........................... PASS (2d850cd3a218b6b9) 22585273
> checking 'combine' ............................ PASS (8750feb29c15297c) 8992851
> checking 'combine' ............................ PASS (c97b83093836307a) 56431472
> checking 'tile' ............................... PASS (2144c4a0e85d648a) 72664167
> checking 'untile' ............................. PASS (340bd33c3fc91099) 60048605
> checking 'abind' .............................. PASS (0fe154b843d8fc58) 9273358
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.13-bioc/meat/EBImage.Rcheck/00check.log’
for details.
EBImage.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL EBImage
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’
* installing *source* package ‘EBImage’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c EBImage.c -o EBImage.o
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c clahe.c -o clahe.o
clahe.c: In function ‘CLAHE’:
clahe.c:223:19: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
223 | uiSubY = uiYSize+1 >> 1; uiYU = uiNrY-1; uiYB = uiYU;
| ~~~~~~~^~
clahe.c:235:23: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
235 | uiSubX = uiXSize+1 >> 1; uiXL = uiNrX - 1; uiXR = uiXL;
| ~~~~~~~^~
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c distmap.cpp -o distmap.o
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c drawCircle.c -o drawCircle.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c floodFill.cpp -o floodFill.o
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c getFrames.c -o getFrames.o
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c haralick.c -o haralick.o
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c medianFilter.c -o medianFilter.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c morphology.cpp -o morphology.o
morphology.cpp: In instantiation of ‘void compute_lookup_table_for_line_erode(type***, type*, int, int, chordSet*, PointXY) [with type = int]’:
morphology.cpp:253:39: required from ‘void erode_dilate(type*, type*, PointXY, int, int, chordSet*, type***) [with type = int]’
morphology.cpp:340:27: required from ‘void _morphology(type*, type*, PointXY, int, SEXP, int) [with type = int; SEXP = SEXPREC*]’
morphology.cpp:374:79: required from here
morphology.cpp:196:14: warning: statement has no effect [-Wunused-value]
196 | for (i; i < 0; ++i) {
| ^
morphology.cpp:199:14: warning: statement has no effect [-Wunused-value]
199 | for (i; i < maxX; ++i) {
| ^
morphology.cpp:203:14: warning: statement has no effect [-Wunused-value]
203 | for (i; i < size.x + set->maxXoffset; ++i) {
| ^
morphology.cpp: In instantiation of ‘void compute_lookup_table_for_line_dilate(type***, type*, int, int, chordSet*, PointXY) [with type = int]’:
morphology.cpp:257:39: required from ‘void erode_dilate(type*, type*, PointXY, int, int, chordSet*, type***) [with type = int]’
morphology.cpp:340:27: required from ‘void _morphology(type*, type*, PointXY, int, SEXP, int) [with type = int; SEXP = SEXPREC*]’
morphology.cpp:374:79: required from here
morphology.cpp:163:14: warning: statement has no effect [-Wunused-value]
163 | for (i; i < 0; ++i) {
| ^
morphology.cpp:166:14: warning: statement has no effect [-Wunused-value]
166 | for (i; i < maxX; ++i) {
| ^
morphology.cpp:170:14: warning: statement has no effect [-Wunused-value]
170 | for (i; i < size.x + set->maxXoffset; ++i) {
| ^
morphology.cpp: In instantiation of ‘void compute_lookup_table_for_line_erode(type***, type*, int, int, chordSet*, PointXY) [with type = double]’:
morphology.cpp:253:39: required from ‘void erode_dilate(type*, type*, PointXY, int, int, chordSet*, type***) [with type = double]’
morphology.cpp:340:27: required from ‘void _morphology(type*, type*, PointXY, int, SEXP, int) [with type = double; SEXP = SEXPREC*]’
morphology.cpp:377:76: required from here
morphology.cpp:196:14: warning: statement has no effect [-Wunused-value]
196 | for (i; i < 0; ++i) {
| ^
morphology.cpp:199:14: warning: statement has no effect [-Wunused-value]
199 | for (i; i < maxX; ++i) {
| ^
morphology.cpp:203:14: warning: statement has no effect [-Wunused-value]
203 | for (i; i < size.x + set->maxXoffset; ++i) {
| ^
morphology.cpp: In instantiation of ‘void compute_lookup_table_for_line_dilate(type***, type*, int, int, chordSet*, PointXY) [with type = double]’:
morphology.cpp:257:39: required from ‘void erode_dilate(type*, type*, PointXY, int, int, chordSet*, type***) [with type = double]’
morphology.cpp:340:27: required from ‘void _morphology(type*, type*, PointXY, int, SEXP, int) [with type = double; SEXP = SEXPREC*]’
morphology.cpp:377:76: required from here
morphology.cpp:163:14: warning: statement has no effect [-Wunused-value]
163 | for (i; i < 0; ++i) {
| ^
morphology.cpp:166:14: warning: statement has no effect [-Wunused-value]
166 | for (i; i < maxX; ++i) {
| ^
morphology.cpp:170:14: warning: statement has no effect [-Wunused-value]
170 | for (i; i < size.x + set->maxXoffset; ++i) {
| ^
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c nativeRaster.c -o nativeRaster.o
nativeRaster.c: In function ‘nativeRaster’:
nativeRaster.c:38:7: warning: pointer targets in assignment from ‘int *’ to ‘uint32_t *’ {aka ‘unsigned int *’} differ in signedness [-Wpointer-sign]
38 | out = INTEGER(res);
| ^
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c normalize.c -o normalize.o
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c objects.c -o objects.o
objects.c: In function ‘paintObjects’:
objects.c:21:30: warning: unused variable ‘dp’ [-Wunused-variable]
21 | double *obj, *src, *tgt, dp, val;
| ^~
objects.c: In function ‘stackObjects’:
objects.c:295:10: warning: ‘res’ may be used uninitialized in this function [-Wmaybe-uninitialized]
295 | return res;
| ^~~
In file included from objects.h:5,
from objects.c:1:
/home/biocbuild/bbs-3.13-bioc/R/include/Rdefines.h:154:28: warning: ‘dim’ may be used uninitialized in this function [-Wmaybe-uninitialized]
154 | #define SET_DIM(x, n) Rf_setAttrib(x, R_DimSymbol, n)
| ^~~~~~~~~~~~
objects.c:192:13: note: ‘dim’ was declared here
192 | SEXP res, dim, xys, img;
| ^~~
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c ocontour.c -o ocontour.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c propagate.cpp -o propagate.o
propagate.cpp: In function ‘SEXPREC* propagate(SEXP, SEXP, SEXP, SEXP)’:
propagate.cpp:174:31: warning: ‘mask’ may be used uninitialized in this function [-Wmaybe-uninitialized]
174 | if (! mask_in[IJ(p.i, p.j)]) continue;
| ^
propagate.cpp:197:8: note: ‘mask’ was declared here
197 | int *mask;
| ^~~~
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c spatial.c -o spatial.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c thresh.cpp -o thresh.o
thresh.cpp: In instantiation of ‘void _thresh(T*, int*, int, int, int, int, double) [with T = int]’:
thresh.cpp:50:76: required from here
thresh.cpp:64:42: warning: unused variable ‘i’ [-Wunused-variable]
64 | int xi, yi, u, k, l, ou, nu, ov, nv, i;
| ^
thresh.cpp: In instantiation of ‘void _thresh(T*, int*, int, int, int, int, double) [with T = double]’:
thresh.cpp:53:76: required from here
thresh.cpp:64:42: warning: unused variable ‘i’ [-Wunused-variable]
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c tile.cpp -o tile.o
tile.cpp: In function ‘SEXPREC* tile(SEXP, SEXP, SEXP)’:
tile.cpp:24:17: warning: unused variable ‘ims’ [-Wunused-variable]
24 | SEXP res, dm, ims;
| ^~~
tile.cpp: In function ‘SEXPREC* untile(SEXP, SEXP, SEXP)’:
tile.cpp:161:29: warning: unused variable ‘y’ [-Wunused-variable]
161 | int nprotect=0, i, j, im, y, iim;
| ^
tile.cpp:162:18: warning: unused variable ‘dat’ [-Wunused-variable]
162 | SEXP res, dim, dat;
| ^~~
tile.cpp:163:11: warning: unused variable ‘src’ [-Wunused-variable]
163 | double *src, *tgt;
| ^~~
tile.cpp:163:17: warning: unused variable ‘tgt’ [-Wunused-variable]
163 | double *src, *tgt;
| ^~~
gcc -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c tools.c -o tools.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c transpose.cpp -o transpose.o
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -c watershed.cpp -o watershed.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o EBImage.so EBImage.o clahe.o distmap.o drawCircle.o floodFill.o getFrames.o haralick.o medianFilter.o morphology.o nativeRaster.o normalize.o objects.o ocontour.o propagate.o spatial.o thresh.o tile.o tools.o transpose.o watershed.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-EBImage/00new/EBImage/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘abind’ in package ‘EBImage’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EBImage)
EBImage.Rcheck/tests/test.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> ## cat tests/test.R | R --vanilla &>tests/test.Rout.save
> library("EBImage")
>
> set.seed(0) # make random color permutations in 'colorLabels' reproducible
> .digits = floor(-log10(.Machine$double.eps^.5) - 1)
>
> ## returns a hashcode given an object
> hash = function (x) .Call(digest:::digest_impl, serialize(x, connection=NULL, ascii=FALSE, xdr=FALSE), 7L, -1L, 14L, 0L, 0L, PACKAGE="digest")
>
> hash.old <- function(x) {
+ if (is.list(x)) hash(sapply(x,hash))
+ else {
+ xd <- as.numeric(x)
+ xd <- xd[!is.nan(xd)]
+ if (is.matrix(xd)) sum(xd*(1:length(xd))) + 0.7*hash(dim(xd))
+ else sum(xd*(1:length(xd))) - 0.1
+ }
+ }
>
> ## try to evaluate fun(x,...)
> check <- function(fun, x, ..., capture.output=FALSE, suppressWarnings=FALSE, suppressMessages=FALSE, expectError=FALSE, round=FALSE, debug=FALSE) {
+ passed <- TRUE
+
+ cat(sprintf("checking \'%s\' %s ", fun, paste(rep(".", 35L-nchar(fun)), collapse = "")))
+
+ expr = quote(do.call(fun,c(list(x),list(...))))
+ if ( isTRUE(capture.output) ) expr = call("capture.output", expr)
+ if ( isTRUE(suppressWarnings) ) expr = call("suppressWarnings", expr)
+ if ( isTRUE(suppressMessages) ) expr = call("suppressMessages", expr)
+
+ y <- try(eval(expr), silent=TRUE)
+
+ if ( (class(y)=="try-error" && !isTRUE(expectError) ) || ( is.Image(y) && !validObject(y)) ) {
+ y <- NULL
+ passed <- FALSE
+ }
+
+ if (passed) {
+ if ( isTRUE(round) && class(y)!="try-error")
+ y = if ( is.list(y) ) lapply(y, round, digits=.digits) else round(y, digits = .digits)
+ cat("PASS (", hash(y), ") ", hash.old(y), "\n", sep="")
+ }
+ else cat("FAIL\n")
+
+ if ( isTRUE(debug) ) {
+ if (is.Image(y)) show(y)
+ if (is.array(y)) display(y, all=TRUE, interpolate=FALSE)
+ else if (is.character(y)) cat(y, sep="\n")
+ }
+
+ y
+ }
>
> checkIO <- function(name) {
+ cat("checking IO for \'", name, "\' ... ", sep="")
+ x = get(name)
+ y = FALSE
+ if ( !is.null(x) ) {
+ y <- try({
+ xx <- readImage(writeImage(x, tempfile("", fileext = ".tif")))
+ dimnames(xx) <- dimnames(x)
+ identical(x, xx)
+ }, silent=TRUE)
+ }
+ if ( isTRUE(y) ) cat("PASS\n") else cat("FAIL\n")
+ invisible(y)
+ }
>
> testIOFunctions <- function(...) invisible(lapply(list(...), function(y) checkIO(y)))
>
> testEBImageFunctions <- function(x) {
+ cat("new test (hash=", hash(x), ")\n", sep="")
+
+ z <- check("show", x, capture.output=TRUE)
+ z <- check("print", x, short=TRUE, capture.output=TRUE)
+ if ( typeof(x)=="logical" )
+ z <- check("hist", EBImage:::castImage(x), breaks = c(0, .5, 1))
+ else
+ z <- check("hist", x)
+
+ ## pixel arithmetic
+ z <- check(">", x, 0.5)
+ z <- check("+", x, x)
+ z <- check("/", x, 2)
+ z <- check("*", 2L, x)
+ z <- check("median", x)
+ z <- check("quantile", x)
+
+ ## image methods
+ z <- check("Image", x, colormode="Color")
+ z <- check("as.Image", x)
+ z <- check("is.Image", x)
+ z <- check("imageData", x)
+ z <- check("imageData<-", x, z)
+ z <- check("as.raster", x)
+ z <- check("colorMode<-", x, Grayscale, suppressWarnings=TRUE)
+ y <- check("numberOfFrames", x, type="render")
+ z <- if ( y==1L ) check("getFrames", x, 1L, "render") else check("getFrames", x)
+ z <- check("display", x, method = "browser", tempDir = file.path(dirname(tempdir()), "EBImage_tmp"))
+ if ( y>2L ) {
+ z <- check("display", x, method = "raster", all = TRUE)
+ z <- check("image", x, i = 3L)
+ }
+ else {
+ z <- if (y==1L) check("display", x, method = "raster") else check("display", x, method = "raster", frame = 2L, suppressMessages=TRUE)
+ z <- check("image", x, suppressMessages=TRUE)
+ }
+
+ ## drawCircle
+ d <- dim(x)
+ c.x <- ceiling(d[1L]/2)
+ c.y <- ceiling(d[2L]/2)
+ radius <- max(c.x-1, 1)
+ nf <- numberOfFrames(x, "render")
+ fill <- nf > 1
+ col <- if ( colorMode(x)==Color ) "yellow" else 1
+ z <- check("drawCircle", x, c.x, c.x, radius, col, fill, nf)
+
+ ## subset
+ sub <- list(x, 1:min(10,d[1L]), 1:min(7,d[2L]))
+ if (length(d)>2) sub <- c(sub, rep(TRUE, length(d)-2))
+ z <- do.call("check", c("[", sub))
+
+ ## spatial transform
+ z <- check("resize", x, 137, 22)
+ z <- check("rotate", x, 20)
+ z <- check("flip", x)
+ z <- check("flop", x)
+ z <- check("translate", x, c(-7, 5), bg.col=1)
+ z <- check("affine", x, matrix(c(-7, 5, 0.1, -0.2, 0.3, 1), ncol=2L))
+ z <- check("transpose", x)
+
+ ## segmentation
+ fd = pmin(5, (d[1:2]-1)/2)
+ z <- check("thresh", x, w=fd[1L], h=fd[2L])
+ y <- check("channel", x, "luminance")
+ z <- check("otsu", y)
+ y <- suppressWarnings(normalize(y, separate=FALSE))
+ y <- check("bwlabel", y > 0.5)
+ z <- check("colorLabels", y, suppressWarnings=TRUE)
+ z <- check("stackObjects", y, x)
+ z <- check("stackObjects", Image(dim=dim(y)), x)
+ cls <- if ( colorMode(x)==Color ) TRUE else FALSE
+ z <- check("paintObjects", y, x, col=c("#ff00ff", "#ffff00"), opac=c(1.0, 0.5), thick=cls, closed=cls)
+ z <- check("rmObjects", y, as.list(seq_len(numberOfFrames(y))), cls)
+ z <- check("reenumerate", z)
+ z <- check("reenumerate", y)
+
+ ## features
+ x1 <- getFrame(x, 1)
+ x2 <- list(x=x1, y=2*x1)
+ y1 <- getFrame(y, 1)
+ expandRef <- if ( min(dim(x1)) > 31L ) function(ref, refnames) standardExpandRef(ref, refnames, gblob(n=31L)) else NULL
+ z <- check("computeFeatures", y1, x2, expandRef = expandRef, round = !is.null(expandRef))
+ z <- check("computeFeatures", y1, x2, expandRef = expandRef, properties = TRUE)
+
+ ## curvature
+ y <- check("ocontour", x>0.5)
+ if (length(y) > 0L ) z <- check("localCurvature", y[[1L]], round=TRUE)
+
+ ## filtering
+ z <- check("normalize", x, suppressWarnings=TRUE)
+ z <- check("normalize", x, inputRange=c(0.1, 0.9), suppressWarnings=TRUE)
+ z <- check("gblur", x, sigma=1, expectError=min(d)<7, round=TRUE)
+ y <- if (cls) "replicate" else if (nf>1) 0.5 else "circular"
+ z <- check("filter2", x, array(1, dim=c(5, 5)), y, round=TRUE)
+ z <- check("medianFilter", x, 2)
+ z <- check("equalize", x, suppressWarnings=TRUE)
+
+ ## morphological operations
+ y <- x > 0.5
+ z <- check("erode", y)
+ z <- check("dilate", y, makeBrush(5, 'disc'))
+ z <- check("opening", y, makeBrush(7, 'line'))
+ z <- check("closing", y, makeBrush(4, 'line', angle=0), suppressWarnings=TRUE)
+ z <- check("whiteTopHat", x, makeBrush(3, 'box'))
+ z <- check("blackTopHat", x, makeBrush(5, 'disc'))
+ z <- check("selfComplementaryTopHat", x)
+ z <- check("distmap", y)
+ z <- check("watershed", z)
+ z <- check('floodFill', x, c(5, 5), 0.5)
+ z <- check('fillHull', y)
+
+ ## propagate
+ y <- thresh(x, w=fd[1L], h=fd[2L], offset=0.02)
+ y <- fillHull(y)
+ y <- bwlabel(y)
+ z <- check("propagate", x, y, x>0.5)
+
+ ## colorspace
+ z <- check("toRGB", x)
+ z <- check("rgbImage", x, x>0.5)
+ z <- check("colormap", channel(x, "luminance"), heat.colors(16L))
+
+ ## image stacking, combining, tiling
+ y <- check("combine", list(NULL, x, x, NULL, NULL))
+ z <- check("combine", x, y, y)
+ y <- check("tile", z, nx=3)
+ z <- check("untile", y, c(3, 2))
+ y <- check("abind", list(x, x), along=length(d)+1L)
+ cat("\n")
+ }
>
>
> ## check error handling
> try.readImage <- function(...) tryCatch(suppressWarnings(readImage(...)), error = function(e) NULL)
> mock <- try.readImage(system.file("images", package="EBImage"), type="png")
> mock <- try.readImage("http://www.huber.embl.de/EBImage/missing.file ", type="png")
>
> ## single greyscale and color images
> sample <- try.readImage(system.file("images","sample.png", package="EBImage"))
> sample.color <- try.readImage(system.file("images","sample-color.png", package="EBImage"))
> ## multi-frame image stack
> f = system.file("images","nuclei.tif", package="EBImage")
> nuclei = try.readImage(c(f, f))
> ## test reading from URL
> logo <- try.readImage("http://www.huber.embl.de/EBImage/logo.png")
>
> ## test: IO operations
> testIOFunctions("sample", "sample.color", "nuclei", "logo")
checking IO for 'sample' ... PASS
checking IO for 'sample.color' ... PASS
checking IO for 'nuclei' ... PASS
checking IO for 'logo' ... PASS
Warning message:
In readTIFF(x, all = all, ...) :
TIFFReadDirectory: Sum of Photometric type-related color channels and ExtraSamples doesn't match SamplesPerPixel. Defining non-color channels as ExtraSamples.
>
> ## test: black image
> testEBImageFunctions(Image(0, c(8, 8)))
new test (hash=03724aaea0cf64b4)
checking 'show' ............................... PASS (5a93d2a87828912b) NA
checking 'print' .............................. PASS (0007ac6dee6a14da) NA
checking 'hist' ............................... PASS (8ef6dc298b72d591) 544b329c50204069
checking '>' .................................. PASS (91517a74c2895221) -0.1
checking '+' .................................. PASS (03724aaea0cf64b4) -0.1
checking '/' .................................. PASS (03724aaea0cf64b4) -0.1
checking '*' .................................. PASS (03724aaea0cf64b4) -0.1
checking 'median' ............................. PASS (8396e8397399bb05) -0.1
checking 'quantile' ........................... PASS (5e6b34b7d87730f0) -0.1
checking 'Image' .............................. PASS (e4b04ad17c704314) -0.1
checking 'as.Image' ........................... PASS (03724aaea0cf64b4) -0.1
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (1ba6fa2bac2e6157) -0.1
checking 'imageData<-' ........................ PASS (03724aaea0cf64b4) -0.1
checking 'as.raster' .......................... PASS (e8f1c1057deba532) NA
checking 'colorMode<-' ........................ PASS (03724aaea0cf64b4) -0.1
checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
checking 'getFrames' .......................... PASS (437d348905e7edea) 83048ee9a100740d
checking 'display' ............................ PASS (4c9befc7a9f9f22e) 8b45ca00d2ff9b26
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (76ab1bcd040f633c) 447.9
checking '[' .................................. PASS (3c13b8fa403f3a61) -0.1
checking 'resize' ............................. PASS (59b56ab6bbfb3b98) -0.1
checking 'rotate' ............................. PASS (d9d1aa63f93f02d0) -0.1
checking 'flip' ............................... PASS (03724aaea0cf64b4) -0.1
checking 'flop' ............................... PASS (03724aaea0cf64b4) -0.1
checking 'translate' .......................... PASS (8f2e405bb6973b4a) 1932.9
checking 'affine' ............................. PASS (03724aaea0cf64b4) -0.1
checking 'transpose' .......................... PASS (03724aaea0cf64b4) -0.1
checking 'thresh' ............................. PASS (c13bdaf3a3ddff95) -0.1
checking 'channel' ............................ PASS (03724aaea0cf64b4) -0.1
checking 'otsu' ............................... PASS (e3b39ef666a0ce39) -0.09804688
checking 'bwlabel' ............................ PASS (c13bdaf3a3ddff95) -0.1
checking 'colorLabels' ........................ PASS (73c6f975aa7b9638) -0.1
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (03724aaea0cf64b4) -0.1
checking 'rmObjects' .......................... PASS (c13bdaf3a3ddff95) -0.1
checking 'reenumerate' ........................ PASS (c13bdaf3a3ddff95) -0.1
checking 'reenumerate' ........................ PASS (c13bdaf3a3ddff95) -0.1
checking 'computeFeatures' .................... PASS (d956c282ac7180e4) -0.1
checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 9bc95f30143c0aa0
checking 'ocontour' ........................... PASS (0cbbfbd6c2b5057a) 0cbbfbd6c2b5057a
checking 'normalize' .......................... PASS (03724aaea0cf64b4) -0.1
checking 'normalize' .......................... PASS (03724aaea0cf64b4) -0.1
checking 'gblur' .............................. PASS (03724aaea0cf64b4) -0.1
checking 'filter2' ............................ PASS (03724aaea0cf64b4) -0.1
checking 'medianFilter' ....................... PASS (03724aaea0cf64b4) -0.1
checking 'equalize' ........................... PASS (03724aaea0cf64b4) -0.1
checking 'erode' .............................. PASS (91517a74c2895221) -0.1
checking 'dilate' ............................. PASS (91517a74c2895221) -0.1
checking 'opening' ............................ PASS (91517a74c2895221) -0.1
checking 'closing' ............................ PASS (91517a74c2895221) -0.1
checking 'whiteTopHat' ........................ PASS (03724aaea0cf64b4) -0.1
checking 'blackTopHat' ........................ PASS (03724aaea0cf64b4) -0.1
checking 'selfComplementaryTopHat' ............ PASS (03724aaea0cf64b4) -0.1
checking 'distmap' ............................ PASS (03724aaea0cf64b4) -0.1
checking 'watershed' .......................... PASS (c13bdaf3a3ddff95) -0.1
checking 'floodFill' .......................... PASS (b7521415b91cdd6a) 1039.9
checking 'fillHull' ........................... PASS (91517a74c2895221) -0.1
checking 'propagate' .......................... PASS (c13bdaf3a3ddff95) -0.1
checking 'toRGB' .............................. PASS (73c6f975aa7b9638) -0.1
checking 'rgbImage' ........................... PASS (73c6f975aa7b9638) -0.1
checking 'colormap' ........................... PASS (f55f763f0bce6d0e) 2079.9
checking 'combine' ............................ PASS (7d8cabf23a7147bf) -0.1
checking 'combine' ............................ PASS (dfe23dd6a6fd08b8) -0.1
checking 'tile' ............................... PASS (63b8539b976f10f9) 42140.88
checking 'untile' ............................. PASS (fc2ab5092822346e) 16809.31
checking 'abind' .............................. PASS (7d8cabf23a7147bf) -0.1
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
> ## test: white image
> testEBImageFunctions(Image(1L, c(5, 5)))
new test (hash=5e369a5a8c06ea6e)
checking 'show' ............................... PASS (d7ff39dcf34291a7) NA
checking 'print' .............................. PASS (423045c171032825) NA
checking 'hist' ............................... PASS (c32dc2571db86a0f) da29db1ad663925e
checking '>' .................................. PASS (ab60d77d8694845c) 324.9
checking '+' .................................. PASS (ccb4c957b356b423) 649.9
checking '/' .................................. PASS (e68dd3c4bf42ae06) 162.4
checking '*' .................................. PASS (ccb4c957b356b423) 649.9
checking 'median' ............................. PASS (7c79dea3bfc1415b) 0.9
checking 'quantile' ........................... PASS (03ab24e6a573bd6b) 14.9
checking 'Image' .............................. PASS (e06d5f65342df035) 324.9
checking 'as.Image' ........................... PASS (5e369a5a8c06ea6e) 324.9
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (a72e950dc2c633c4) 324.9
checking 'imageData<-' ........................ PASS (5e369a5a8c06ea6e) 324.9
checking 'as.raster' .......................... PASS (76158aebe747f7e1) NA
checking 'colorMode<-' ........................ PASS (5e369a5a8c06ea6e) 324.9
checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
checking 'getFrames' .......................... PASS (5be9802bf124fe9c) 0793da5ae058772e
checking 'display' ............................ PASS (174250a6d96dee60) 5fa8470e1b05b374
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (a3847050dd15905c) 324.9
checking '[' .................................. PASS (5e369a5a8c06ea6e) 324.9
checking 'resize' ............................. PASS (81601207cc4e4223) 4543605
checking 'rotate' ............................. PASS (3db98677c68c5102) 483.6843
checking 'flip' ............................... PASS (5e369a5a8c06ea6e) 324.9
checking 'flop' ............................... PASS (5e369a5a8c06ea6e) 324.9
checking 'translate' .......................... PASS (a3847050dd15905c) 324.9
checking 'affine' ............................. PASS (92683959c9ed97c3) 39.9
checking 'transpose' .......................... PASS (5e369a5a8c06ea6e) 324.9
checking 'thresh' ............................. PASS (dafc92132d191221) -0.1
checking 'channel' ............................ PASS (5e369a5a8c06ea6e) 324.9
checking 'otsu' ............................... PASS (2abebb5cf42f343e) 0.8980469
checking 'bwlabel' ............................ PASS (5e369a5a8c06ea6e) 324.9
checking 'colorLabels' ........................ PASS (a7e8ce686b7c6eec) 2849.9
checking 'stackObjects' ....................... PASS (995b03d1197fdd56) 324.9
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (fbe94deb2c7c7e12) 270.7333
checking 'rmObjects' .......................... PASS (dafc92132d191221) -0.1
checking 'reenumerate' ........................ PASS (dafc92132d191221) -0.1
checking 'reenumerate' ........................ PASS (5e369a5a8c06ea6e) 324.9
checking 'computeFeatures' .................... PASS (1e197f38fe3db7df) 950932.9
checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 9bc95f30143c0aa0
checking 'ocontour' ........................... PASS (1ad47b9dc5e279b9) 5742434f54ead73b
checking 'localCurvature' ..................... PASS (07aef8b9d0c42e30) a52d22f2e3bb2222
checking 'normalize' .......................... PASS (a3847050dd15905c) 324.9
checking 'normalize' .......................... PASS (a3847050dd15905c) 324.9
checking 'gblur' .............................. PASS (34be5e3328df689f) NA
checking 'filter2' ............................ PASS (046936d9c22a44d3) 8124.9
checking 'medianFilter' ....................... PASS (a3847050dd15905c) 324.9
checking 'equalize' ........................... PASS (5e369a5a8c06ea6e) 324.9
checking 'erode' .............................. PASS (ab60d77d8694845c) 324.9
checking 'dilate' ............................. PASS (ab60d77d8694845c) 324.9
checking 'opening' ............................ PASS (ab60d77d8694845c) 324.9
checking 'closing' ............................ PASS (ab60d77d8694845c) 324.9
checking 'whiteTopHat' ........................ PASS (dafc92132d191221) -0.1
checking 'blackTopHat' ........................ PASS (dafc92132d191221) -0.1
checking 'selfComplementaryTopHat' ............ PASS (ccb4c957b356b423) 649.9
checking 'distmap' ............................ PASS (4620168ff1c2a437) Inf
checking 'watershed' .......................... PASS (5e369a5a8c06ea6e) 324.9
checking 'floodFill' .......................... PASS (dafc92132d191221) -0.1
checking 'fillHull' ........................... PASS (ab60d77d8694845c) 324.9
checking 'propagate' .......................... PASS (dafc92132d191221) -0.1
checking 'toRGB' .............................. PASS (f3b87c6a40e54c68) 2849.9
checking 'rgbImage' ........................... PASS (a1c021690e069b07) 1274.9
checking 'colormap' ........................... PASS (948ec87fd2adc7a9) 2652.253
checking 'combine' ............................ PASS (8c39678924e12a09) 1274.9
checking 'combine' ............................ PASS (072d49f53072e43b) 7874.9
checking 'tile' ............................... PASS (16eb65ee8bbcb932) 24420.64
checking 'untile' ............................. PASS (8bcebbd606485233) 10445.49
checking 'abind' .............................. PASS (8c39678924e12a09) 1274.9
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
4: In hash.old(y) : NAs introduced by coercion
>
> ## test: 2D Grayscale 64x48
> x <- nuclei[50:113,208:255,2]
> testEBImageFunctions(as.array(x))
new test (hash=3e469356855e6210)
checking 'show' ............................... PASS (0c6212669ee6288d) NA
checking 'print' .............................. PASS (0c6212669ee6288d) NA
checking 'hist' ............................... PASS (e7a708b4f96f88dc) bb3d9d4fe47f137d
checking '>' .................................. PASS (0a927a877b0b85eb) 1217568
checking '+' .................................. PASS (2c51607a58b46974) 2940144
checking '/' .................................. PASS (a872fc97379d58f5) 735035.9
checking '*' .................................. PASS (2c51607a58b46974) 2940144
checking 'median' ............................. PASS (d2a8be6a346c3d28) 0.04509804
checking 'quantile' ........................... PASS (645f4aadbce7bdea) 7.331373
checking 'Image' .............................. PASS (923c3911d773eb6e) 1470072
checking 'as.Image' ........................... PASS (b7ae9a016c5a19ec) 1470072
checking 'is.Image' ........................... PASS (69f0cf1cfd5cd8ed) -0.1
checking 'imageData' .......................... PASS (3e469356855e6210) 1470072
checking 'imageData<-' ........................ PASS (3e469356855e6210) 1470072
checking 'as.raster' .......................... PASS (42efa6b3b04694cf) NA
checking 'colorMode<-' ........................ PASS (b8d002268bfac3eb) NA
checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
checking 'getFrames' .......................... PASS (d38b8f6c1a1504a8) 31b837e1233e61ed
checking 'display' ............................ PASS (dada341199e50c3d) e71f191dd8006bab
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (872845fa91c628a6) 1607165
checking '[' .................................. PASS (711703fde7cc915e) 48.94314
checking 'resize' ............................. PASS (7882055c8b670bf4) 1419476
checking 'rotate' ............................. PASS (559860bb5c99cb82) 2493977
checking 'flip' ............................... PASS (8834ca70d449207a) 1195977
checking 'flop' ............................... PASS (d73abd773dfc066a) 1462119
checking 'translate' .......................... PASS (5744e19288b9d7f0) 2133961
checking 'affine' ............................. PASS (11616142290451c1) 54171.17
checking 'transpose' .......................... PASS (aa87d51a100b139f) 1522055
checking 'thresh' ............................. PASS (c790c6a6872d73d0) 1262811
checking 'channel' ............................ PASS (3e469356855e6210) 1470072
checking 'otsu' ............................... PASS (3aea1e91f3716bcb) 0.3160156
checking 'bwlabel' ............................ PASS (5055cb94d5293a15) 1199387
checking 'colorLabels' ........................ PASS (464d65c8da42be0d) 10021713
checking 'stackObjects' ....................... PASS (c5669f863a2ba20e) 718602.9
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (19a9fbb907cee1c4) 1447733
checking 'rmObjects' .......................... PASS (365ace8a4657cb08) -0.1
checking 'reenumerate' ........................ PASS (365ace8a4657cb08) -0.1
checking 'reenumerate' ........................ PASS (5055cb94d5293a15) 1199387
checking 'computeFeatures' .................... PASS (f59aa3f08e782acf) 3634215
checking 'computeFeatures' .................... PASS (4e7e75f941531854) 162981db75daaae7
checking 'ocontour' ........................... PASS (790a5f5b45092d41) 57adc3055202768b
checking 'localCurvature' ..................... PASS (fb6d4b13b08dcac4) be6c48fc7c8a3c8a
checking 'normalize' .......................... PASS (1f79956b7887dd73) 1431381
checking 'normalize' .......................... PASS (13a2d37d997199f9) 1266798
checking 'gblur' .............................. PASS (203a6d72b1fd5eba) 1466231
checking 'filter2' ............................ PASS (c82a1ece6902714d) 36592176
checking 'medianFilter' ....................... PASS (4140c87b3a1db93d) 1454712
checking 'equalize' ........................... PASS (ba175363e5576ad1) 2642794
checking 'erode' .............................. PASS (bee7898f6d8d547b) 759774.9
checking 'dilate' ............................. PASS (ed04adac54c645fd) 1797576
checking 'opening' ............................ PASS (d1c6ca8aafbd90cb) 1152484
checking 'closing' ............................ PASS (b8cf094b52fe1744) 1232737
checking 'whiteTopHat' ........................ PASS (9b53631dd222dd50) 18730.15
checking 'blackTopHat' ........................ PASS (089cd73847d97de5) 27716.23
checking 'selfComplementaryTopHat' ............ PASS (cc378ce1d0553ecd) 2929436
checking 'distmap' ............................ PASS (f98a44bf21faa222) 3826969
checking 'watershed' .......................... PASS (b39c109238f0c74b) 2762113
checking 'floodFill' .......................... PASS (c59341ffade6129a) 1470197
checking 'fillHull' ........................... PASS (0a927a877b0b85eb) 1217568
checking 'propagate' .......................... PASS (cec466bef7a2a81e) 3464201
checking 'toRGB' .............................. PASS (5051d2b131286d46) 12381911
checking 'rgbImage' ........................... PASS (ccc09b31890cd8df) 4859544
checking 'colormap' ........................... PASS (b7020f3851eb7d7c) 11126039
checking 'combine' ............................ PASS (5bda9f75cbc23401) 5597376
checking 'combine' ............................ PASS (306e27bb3ec346e6) 33922678
checking 'tile' ............................... PASS (870e7501fa1f3338) 78718054
checking 'untile' ............................. PASS (868893e062dea032) 72597772
checking 'abind' .............................. PASS (5bda9f75cbc23401) 5597376
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
4: In hash.old(y) : NAs introduced by coercion
>
> ## test: 2D Color 32x48x1
> x <- sample[1:32, 1:48]
> testEBImageFunctions(Image(as.vector(x), dim(x), Color))
new test (hash=7718e616f411c340)
checking 'show' ............................... PASS (1a2c30323dd5a8ee) NA
checking 'print' .............................. PASS (e9fad67b70709e2b) NA
checking 'hist' ............................... PASS (596b544e7cd6f458) e99389080830c142
checking '>' .................................. PASS (e72c38d763e5fabf) 988518.9
checking '+' .................................. PASS (e38cf73f1c0c88a2) 1531522
checking '/' .................................. PASS (df4e8bf818fc26fe) 382880.4
checking '*' .................................. PASS (e38cf73f1c0c88a2) 1531522
checking 'median' ............................. PASS (fc60ee4b14ba4a28) 0.5039216
checking 'quantile' ........................... PASS (436f03b8c9c3ad0e) 10.10392
checking 'Image' .............................. PASS (7718e616f411c340) 765760.9
checking 'as.Image' ........................... PASS (7718e616f411c340) 765760.9
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (19c51d4d9d30d60c) 765760.9
checking 'imageData<-' ........................ PASS (7718e616f411c340) 765760.9
checking 'as.raster' .......................... PASS (05c68b3f51ec838b) NA
checking 'colorMode<-' ........................ PASS (733871e596e328df) 765760.9
checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
checking 'getFrames' .......................... PASS (681aab4c8a24c6c5) e6dc356666b6251c
checking 'display' ............................ PASS (bb2b4586191eb980) 46a272316ccb58ef
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (a6757bb66994b1f7) 782100.7
checking '[' .................................. PASS (25a626878222798c) 1285.273
checking 'resize' ............................. PASS (bb1209a84d6b3709) 2941770
checking 'rotate' ............................. PASS (924fc66d1ec91d44) 1247487
checking 'flip' ............................... PASS (828db3b8ad878bd6) 661525.2
checking 'flop' ............................... PASS (f69b431f36c97abd) 768451.1
checking 'translate' .......................... PASS (3eb2fe0d22e461ed) 820434.5
checking 'affine' ............................. PASS (7a760844869cec92) 22238.15
checking 'transpose' .......................... PASS (d438f72715d302ed) 652051.4
checking 'thresh' ............................. PASS (8b3a72b493ab8540) 382924.9
checking 'channel' ............................ PASS (3982766c7e1077b3) 162800.7
checking 'otsu' ............................... PASS (ebd9ed7a0cf4831d) 0.03085937
checking 'bwlabel' ............................ PASS (498723eb57bcca48) 832970.9
checking 'colorLabels' ........................ PASS (ecbf282c48506ef2) 3692613
checking 'stackObjects' ....................... PASS (e30de50cc1d8e117) 596493.9
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (9b5026b178720a80) 919069.9
checking 'rmObjects' .......................... PASS (e0ab50f8e544290a) 565.9
checking 'reenumerate' ........................ PASS (e0ab50f8e544290a) 565.9
checking 'reenumerate' ........................ PASS (498723eb57bcca48) 832970.9
checking 'computeFeatures' .................... PASS (0e0499b50d90be9d) 3988836
checking 'computeFeatures' .................... PASS (4e7e75f941531854) 162981db75daaae7
checking 'ocontour' ........................... PASS (ced9c409ca879dc9) 307e5271f94742ce
checking 'localCurvature' ..................... PASS (25e900bf67a8cdb0) 7faa95a1a5954a9d
checking 'normalize' .......................... PASS (b8b2cfe4f431fc83) 747801.4
checking 'normalize' .......................... PASS (3ee0aade2890ed53) 809649.2
checking 'gblur' .............................. PASS (0c28ab262af637d1) 761679.3
checking 'filter2' ............................ PASS (bf01322f9e0aed7a) 19130329
checking 'medianFilter' ....................... PASS (189cf2d04b2316f5) 765141.6
checking 'equalize' ........................... PASS (b525d614a289c5a3) 705546.8
checking 'erode' .............................. PASS (84add15c6fa8ac14) 908526.9
checking 'dilate' ............................. PASS (e99e1ecfd4ef49d3) 1072658
checking 'opening' ............................ PASS (80d457c0bcd57e44) 985798.9
checking 'closing' ............................ PASS (cc9339fed43d2c52) 988727.9
checking 'whiteTopHat' ........................ PASS (25444773943cf26b) 3572.998
checking 'blackTopHat' ........................ PASS (10fae7d8c0f86c96) 7139.473
checking 'selfComplementaryTopHat' ............ PASS (2f97211e82aa8221) 1533178
checking 'distmap' ............................ PASS (218b9e66643db8d3) 12740449
checking 'watershed' .......................... PASS (6edd3aa33ad54089) 988518.9
checking 'floodFill' .......................... PASS (228b47626610f8c9) 765755.4
checking 'fillHull' ........................... PASS (e72c38d763e5fabf) 988518.9
checking 'propagate' .......................... PASS (73d53b87d72f0409) 26630579
checking 'toRGB' .............................. PASS (7718e616f411c340) 765760.9
checking 'rgbImage' ........................... PASS (6df3c3d16757cdd6) 3520680
checking 'colormap' ........................... PASS (8e7f90c18580cd50) 1816912
checking 'combine' ............................ PASS (f156de3e1aff037c) 2960568
checking 'combine' ............................ PASS (1bfd38ce66379070) 18119267
checking 'tile' ............................... PASS (3f8e8f9b949597b4) 33061491
checking 'untile' ............................. PASS (9f839c04542fa7e4) 27788327
checking 'abind' .............................. PASS (a65f1e1e2d249be6) 2960568
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
> ## test: 3D Color 65x17x3
> x <- sample.color[1:65, 1:17,]
> testEBImageFunctions(x)
new test (hash=3884fe38962577a7)
checking 'show' ............................... PASS (8331bd653405c3be) NA
checking 'print' .............................. PASS (de22d3dc188680fd) NA
checking 'hist' ............................... PASS (10b008981f19c77a) 3ba2c54847ff49ff
checking '>' .................................. PASS (e6c8a64e9fff6055) 1058553
checking '+' .................................. PASS (5bb860f09b56b4d9) 4072301
checking '/' .................................. PASS (17b2c344ff60cf34) 1018075
checking '*' .................................. PASS (5bb860f09b56b4d9) 4072301
checking 'median' ............................. PASS (a9ae52973fed588b) 0.2333333
checking 'quantile' ........................... PASS (e51be80ed6288f06) 7.280392
checking 'Image' .............................. PASS (3884fe38962577a7) 2036151
checking 'as.Image' ........................... PASS (3884fe38962577a7) 2036151
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (1456dcb0ab2d690b) 2036151
checking 'imageData<-' ........................ PASS (3884fe38962577a7) 2036151
checking 'as.raster' .......................... PASS (abd1d3d0d6329777) NA
checking 'colorMode<-' ........................ PASS (0aa63faa9d4e0838) 2036151
checking 'numberOfFrames' ..................... PASS (7c79dea3bfc1415b) 0.9
checking 'getFrames' .......................... PASS (2ed277d7e69a05d2) 1750981548e81a00
checking 'display' ............................ PASS (3d646d4f07d194ba) e7aad486cf864763
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (5175a6622762681a) 2049936
checking '[' .................................. PASS (c60784a663dd1761) 9950.096
checking 'resize' ............................. PASS (fe9aa55b037def9d) 15155777
checking 'rotate' ............................. PASS (2a6f5001ae7d116d) 4525312
checking 'flip' ............................... PASS (192932ac94cae831) 1977928
checking 'flop' ............................... PASS (55c97a05ee9ed805) 2048664
checking 'translate' .......................... PASS (c866b3232cda2c68) 2998417
checking 'affine' ............................. PASS (517c3559acf97cf4) 226067.6
checking 'transpose' .......................... PASS (e6349d8cc35ed017) 1907377
checking 'thresh' ............................. PASS (e98d9e4246c476a4) 954376.9
checking 'channel' ............................ PASS (84d92148a5eda650) 257578.5
checking 'otsu' ............................... PASS (6a2131f538a2a53e) 0.3316406
checking 'bwlabel' ............................ PASS (2fa4cf414bbb7787) 230329.9
checking 'colorLabels' ........................ PASS (b71e0c0d93c0ba5d) 1920855
checking 'stackObjects' ....................... PASS (f30668520190ffed) 712799.6
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (6a1ba970169d82ad) 2090128
checking 'rmObjects' .......................... PASS (3705fc84a07dd0cd) -0.1
checking 'reenumerate' ........................ PASS (3705fc84a07dd0cd) -0.1
checking 'reenumerate' ........................ PASS (2fa4cf414bbb7787) 230329.9
checking 'computeFeatures' .................... PASS (10c741c6898b4b96) 746878.2
checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 9bc95f30143c0aa0
checking 'ocontour' ........................... PASS (1be2808a87ee437f) 8a1eb9f0654f5114
checking 'localCurvature' ..................... PASS (ad1fddb421e46506) 63cee8a66ce4e24c
checking 'normalize' .......................... PASS (edb5f31f14cd540d) 1788995
checking 'normalize' .......................... PASS (6a1005a2ed478c1e) 1858155
checking 'gblur' .............................. PASS (c61849c1f4dc6d25) 2029979
checking 'filter2' ............................ PASS (760ded68d0c55bfa) 50878763
checking 'medianFilter' ....................... PASS (0b06f73d5aecad7d) 2034604
checking 'equalize' ........................... PASS (2d4d0558bb48cbfc) 2942981
checking 'erode' .............................. PASS (94112a39c70cd747) 830816.9
checking 'dilate' ............................. PASS (a9fbe5f3b81787ec) 1339263
checking 'opening' ............................ PASS (957aea2990d2caa1) 1013295
checking 'closing' ............................ PASS (7af64e74f8e80dbb) 1069405
checking 'whiteTopHat' ........................ PASS (d50f6d3e0e26602d) 16585.63
checking 'blackTopHat' ........................ PASS (310953bdffbb07ee) 22039.05
checking 'selfComplementaryTopHat' ............ PASS (dfefa629c102a00d) 4071763
checking 'distmap' ............................ PASS (6c03a6a34b67eec0) 6038778
checking 'watershed' .......................... PASS (61ebc564dd827878) 1058553
checking 'floodFill' .......................... PASS (f537dd1499704563) 2036854
checking 'fillHull' ........................... PASS (e6c8a64e9fff6055) 1058553
checking 'propagate' .......................... PASS (7b81c961226b8218) 7755487
checking 'toRGB' .............................. PASS (3884fe38962577a7) 2036151
checking 'rgbImage' ........................... PASS (43e895266c1b7cae) 7617867
checking 'colormap' ........................... PASS (972e374a8a23c0e1) 1657338
checking 'combine' ............................ PASS (d56bf3140c7cd055) 8350133
checking 'combine' ............................ PASS (b21bd2c702883543) 52959073
checking 'tile' ............................... PASS (4f60a4ae167b4e6e) 107188639
checking 'untile' ............................. PASS (05afb65e638c5769) 97994583
checking 'abind' .............................. PASS (d56bf3140c7cd055) 8350133
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
> ## test: 3D Grayscale logical 32x32x2
> x <- sample[32:63, 32:63]
> x <- x > otsu(x)
> x <- combine(x, x)
> testEBImageFunctions(x)
new test (hash=db12fa8044d98567)
checking 'show' ............................... PASS (75018abdcca926f0) NA
checking 'print' .............................. PASS (9bacee8faec96053) NA
checking 'hist' ............................... PASS (f0f3640c0aa89c38) 8a0ff1615bea3b3b
checking '>' .................................. PASS (db12fa8044d98567) 1055560
checking '+' .................................. PASS (0b5a21f5cc627e62) 2111120
checking '/' .................................. PASS (bf2545eee0c6aa3e) 527779.9
checking '*' .................................. PASS (0b5a21f5cc627e62) 2111120
checking 'median' ............................. PASS (8396e8397399bb05) -0.1
checking 'quantile' ........................... PASS (130a179fb028f1a7) 8.9
checking 'Image' .............................. PASS (041d3981bcab3129) 1055560
checking 'as.Image' ........................... PASS (db12fa8044d98567) 1055560
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (6b02d87cd459ac19) 1055560
checking 'imageData<-' ........................ PASS (db12fa8044d98567) 1055560
checking 'as.raster' .......................... PASS (26cf978328d1a712) NA
checking 'colorMode<-' ........................ PASS (db12fa8044d98567) 1055560
checking 'numberOfFrames' ..................... PASS (161e41d6aa749739) 1.9
checking 'getFrames' .......................... PASS (ce29246f73d959c3) 34b1f972b2556640
checking 'display' ............................ PASS (2fb2fcab54a4ea5a) a59a5509e2da96ec
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (1180c20b46fdaf4e) 1656514
checking '[' .................................. PASS (2a55f6dafc492b42) 1889.9
checking 'resize' ............................. PASS (211e86386b1010af) 9108608
checking 'rotate' ............................. PASS (d67e39e3cb07d275) 1600126
checking 'flip' ............................... PASS (fbb2a6f78f2cc7f1) 714439.9
checking 'flop' ............................... PASS (f6825dda37058381) 1064092
checking 'translate' .......................... PASS (8d027c3127938636) 1105982
checking 'affine' ............................. PASS (a6e552f84324fe21) 133467.8
checking 'transpose' .......................... PASS (eeeb148d04107340) 758083.9
checking 'thresh' ............................. PASS (5b7b2d141f385123) 824497.9
checking 'channel' ............................ PASS (db12fa8044d98567) 1055560
checking 'otsu' ............................... PASS (69c60dc99d5066e3) 1.4
checking 'bwlabel' ............................ PASS (10092f8e4256496b) 1597368
checking 'colorLabels' ........................ PASS (ebf6961f64378f97) 5485361
checking 'stackObjects' ....................... PASS (d1d99850ff4d6d38) 8889538
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (8c5ef6f490aa8762) 834266.6
checking 'rmObjects' .......................... PASS (0a1cd72f8d3c03e8) 1303423
checking 'reenumerate' ........................ PASS (df75276eeec5813d) 1244828
checking 'reenumerate' ........................ PASS (10092f8e4256496b) 1597368
checking 'computeFeatures' .................... PASS (6f8fccf9be44bfef) 416109350
checking 'computeFeatures' .................... PASS (4e7e75f941531854) 162981db75daaae7
checking 'ocontour' ........................... PASS (9f7d90d6312e32f3) 520feefec500ade4
checking 'localCurvature' ..................... PASS (477746e4fee34aeb) 173b754e552dc94a
checking 'normalize' .......................... PASS (eea76285d45436f7) 1055560
checking 'normalize' .......................... PASS (eea76285d45436f7) 1055560
checking 'gblur' .............................. PASS (bd9e6638aeecda72) 1037581
checking 'filter2' ............................ PASS (448257eb6e58efb1) 26149148
checking 'medianFilter' ....................... PASS (ed8d722e63a36a34) 1030730
checking 'equalize' ........................... PASS (eea76285d45436f7) 1055560
checking 'erode' .............................. PASS (54ccd3aba098da92) 617311.9
checking 'dilate' ............................. PASS (3f0aed5a551e26b5) 1591594
checking 'opening' ............................ PASS (ae3c29b4498904c5) 861145.9
checking 'closing' ............................ PASS (2e26e13058dee387) 1188258
checking 'whiteTopHat' ........................ PASS (28bbffedc1bcb297) 148131.9
checking 'blackTopHat' ........................ PASS (a862285882d4249e) 202411.9
checking 'selfComplementaryTopHat' ............ PASS (92483d40b14844db) 2151192
checking 'distmap' ............................ PASS (766610b2223767b0) 3856630
checking 'watershed' .......................... PASS (eaba5359a5afa00e) 1443978
checking 'floodFill' .......................... PASS (0db2bbd3a6d9a773) 2057384
checking 'fillHull' ........................... PASS (ccded36693237a0e) 1096352
checking 'propagate' .......................... PASS (e3c3ba3dd998f78f) 1613920
checking 'toRGB' .............................. PASS (a594b4f9b88125f1) 8499672
checking 'rgbImage' ........................... PASS (172b07d65c57f496) 4777616
checking 'colormap' ........................... PASS (a6b9bc2f3472cbee) 10283526
checking 'combine' ............................ PASS (f13e4c8ca8445cd0) 3888784
checking 'combine' ............................ PASS (d8a9b6cf082a9146) 23054440
checking 'tile' ............................... PASS (4c3d7086d0c2c786) 48846817
checking 'untile' ............................. PASS (65365043e983ec58) 41221063
checking 'abind' .............................. PASS (af0697002f77c709) 3888784
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
> ## test: 4D Color 33x16x3x2
> x <- sample.color[1:33, 1:16,]
> x <- combine(x, x)
> testEBImageFunctions(x)
new test (hash=290d7a45d7468e5f)
checking 'show' ............................... PASS (78a7303aa046067b) NA
checking 'print' .............................. PASS (9aaf686697ac72be) NA
checking 'hist' ............................... PASS (b01a7d139c82f457) c7b6d9da8efb0d2a
checking '>' .................................. PASS (1f65757da86f51b3) 2013322
checking '+' .................................. PASS (86bdea7870f6d0cc) 4709417
checking '/' .................................. PASS (c3533150260f42c4) 1177354
checking '*' .................................. PASS (86bdea7870f6d0cc) 4709417
checking 'median' ............................. PASS (06af3e4c86ccda6d) 0.3823529
checking 'quantile' ........................... PASS (11ef7960975f6975) 8.139216
checking 'Image' .............................. PASS (290d7a45d7468e5f) 2354709
checking 'as.Image' ........................... PASS (290d7a45d7468e5f) 2354709
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (1936bbf08b457bab) 2354709
checking 'imageData<-' ........................ PASS (290d7a45d7468e5f) 2354709
checking 'as.raster' .......................... PASS (da1c028f359bf00b) NA
checking 'colorMode<-' ........................ PASS (7856ef3bde7528ce) 2354709
checking 'numberOfFrames' ..................... PASS (161e41d6aa749739) 1.9
checking 'getFrames' .......................... PASS (f0d9427233f46fbb) 925d92c4efbf7653
checking 'display' ............................ PASS (bc877f5317c575b2) 9f608546948d6759
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (ad8f0dc0cad6885c) 2650006
checking '[' .................................. PASS (144b12c39a99e2bc) 40701.82
checking 'resize' ............................. PASS (dd96ecc9ed75e744) 76725662
checking 'rotate' ............................. PASS (19319de30582c1d6) 4140744
checking 'flip' ............................... PASS (91c7918c52fe8718) 2309692
checking 'flop' ............................... PASS (49ae0fb3bef587c5) 2358658
checking 'translate' .......................... PASS (a8fcd75113ffb2d2) 3393923
checking 'affine' ............................. PASS (592877c7d17e1d22) 301692.6
checking 'transpose' .......................... PASS (a42245132dbea662) 2303263
checking 'thresh' ............................. PASS (167470821b508c29) 1549362
checking 'channel' ............................ PASS (d4dd2cc593776db0) 287206.2
checking 'otsu' ............................... PASS (2ff953970aa01423) 1.370703
checking 'bwlabel' ............................ PASS (404699231a09f479) 360413.9
checking 'colorLabels' ........................ PASS (4742967f9e3ced6e) 3039066
checking 'stackObjects' ....................... PASS (71587dec63927412) 2472601
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (0daa597dbe10a6cd) 2558300
checking 'rmObjects' .......................... PASS (ea36bf2e51776461) 261782.9
checking 'reenumerate' ........................ PASS (ea36bf2e51776461) 261782.9
checking 'reenumerate' ........................ PASS (404699231a09f479) 360413.9
checking 'computeFeatures' .................... PASS (157a5f036e189a0a) 749353.1
checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 9bc95f30143c0aa0
checking 'ocontour' ........................... PASS (20fad83d539e2372) 9d7964011e11a9be
checking 'localCurvature' ..................... PASS (469cd750daa03946) 88419614c38ea083
checking 'normalize' .......................... PASS (4484b1dbbf34c675) 2693244
checking 'normalize' .......................... PASS (27680837000f1ded) 2315924
checking 'gblur' .............................. PASS (fc2147343f5faed5) 2349701
checking 'filter2' ............................ PASS (958b84b9c0054384) 58841710
checking 'medianFilter' ....................... PASS (8ccc036255fe88d9) 2352447
checking 'equalize' ........................... PASS (e7f99b2a8483f2d3) 2616480
checking 'erode' .............................. PASS (16554ca32b165307) 1547948
checking 'dilate' ............................. PASS (560c069e5292fdc9) 2604996
checking 'opening' ............................ PASS (592d8ab4156490aa) 1919386
checking 'closing' ............................ PASS (c57a6175329f5e45) 2038196
checking 'whiteTopHat' ........................ PASS (6938d64e59a77fe1) 12437.36
checking 'blackTopHat' ........................ PASS (8fbaad8a000d91c5) 19780.97
checking 'selfComplementaryTopHat' ............ PASS (b11bd64d03fe29b9) 4711722
checking 'distmap' ............................ PASS (708df2d4560d23a7) 10836360
checking 'watershed' .......................... PASS (4aa1432f01914277) 2013322
checking 'floodFill' .......................... PASS (02926422d15cf3c2) 2355706
checking 'fillHull' ........................... PASS (1f65757da86f51b3) 2013322
checking 'propagate' .......................... PASS (1656991af484107e) 11618104
checking 'toRGB' .............................. PASS (290d7a45d7468e5f) 2354709
checking 'rgbImage' ........................... PASS (98de7e0def0bab8b) 12071186
checking 'colormap' ........................... PASS (0798dea20c907720) 2273276
checking 'combine' ............................ PASS (579971440faf3f11) 9516503
checking 'combine' ............................ PASS (fb7944257dfefb91) 59844403
checking 'tile' ............................... PASS (e594265685cdf3aa) 114300809
checking 'untile' ............................. PASS (5b25f3b7fc0df1b3) 105862114
checking 'abind' .............................. PASS (a413703585d2e713) 9516503
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
> ## test: 4D Grayscale 16x33x2x3
> colorMode(x) <- Grayscale
> imageData(x) <- aperm(x, c(2L, 1L, 4L, 3L))
> testEBImageFunctions(x)
new test (hash=2a321f78219fa026)
checking 'show' ............................... PASS (3de182583a8c2cf2) NA
checking 'print' .............................. PASS (05d1cebf84274f35) NA
checking 'hist' ............................... PASS (885aba01ae2954f5) c984b74f904ca3b0
checking '>' .................................. PASS (c15b137f0122c2ee) 1541186
checking '+' .................................. PASS (2951b29fcfadda51) 4466272
checking '/' .................................. PASS (b0a06579c4ef390d) 1116568
checking '*' .................................. PASS (2951b29fcfadda51) 4466272
checking 'median' ............................. PASS (06af3e4c86ccda6d) 0.3823529
checking 'quantile' ........................... PASS (11ef7960975f6975) 8.139216
checking 'Image' .............................. PASS (e6ae9fe3a69fec2c) 2233136
checking 'as.Image' ........................... PASS (2a321f78219fa026) 2233136
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (6a221a6a2cec815a) 2233136
checking 'imageData<-' ........................ PASS (2a321f78219fa026) 2233136
checking 'as.raster' .......................... PASS (73a5fd711e0edd14) NA
checking 'colorMode<-' ........................ PASS (2a321f78219fa026) 2233136
checking 'numberOfFrames' ..................... PASS (d9914b6bdfe88a1d) 5.9
checking 'getFrames' .......................... PASS (c2a08dc890b333e2) f6e9a5d38142a455
checking 'display' ............................ PASS (d28e3e75eed04056) c204a94517b6e86e
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (d4dbcf7b516a28b0) 2502013
checking '[' .................................. PASS (efc391fc4ded377e) 41200.75
checking 'resize' ............................. PASS (5ab5e219e21b7d77) 72772706
checking 'rotate' ............................. PASS (5ea8cc41d39fe2c4) 3978266
checking 'flip' ............................... PASS (2578de2eb711ac89) 2296325
checking 'flop' ............................... PASS (c21acaf425029919) 2231772
checking 'translate' .......................... PASS (74e4014bf39793e1) 3827517
checking 'affine' ............................. PASS (76f6b18d2cb7c9c2) 219714.6
checking 'transpose' .......................... PASS (3b5dcc82ff30daf8) 2284582
checking 'thresh' ............................. PASS (3a92d48cd68a67e8) 1426674
checking 'channel' ............................ PASS (2a321f78219fa026) 2233136
checking 'otsu' ............................... PASS (2cdec937ebdb0543) 9.425391
checking 'bwlabel' ............................ PASS (f698416417dde49c) 2016822
checking 'colorLabels' ........................ PASS (b07a31035fc451d5) 15071536
checking 'stackObjects' ....................... PASS (8e5b00026f507a11) 2575847
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (63b2ef8ac8682f98) 2379341
checking 'rmObjects' .......................... PASS (056669f72385f506) 1934575
checking 'reenumerate' ........................ PASS (056669f72385f506) 1934575
checking 'reenumerate' ........................ PASS (f698416417dde49c) 2016822
checking 'computeFeatures' .................... PASS (cddeb53183f0a518) 734993.9
checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 9bc95f30143c0aa0
checking 'ocontour' ........................... PASS (3a230e30e8d15bee) bd10c4b443e2c5c0
checking 'localCurvature' ..................... PASS (a1d19191deda947d) 315e34c611de2b7d
checking 'normalize' .......................... PASS (85d2a91256ddfdaa) 2526618
checking 'normalize' .......................... PASS (4accf817a36301dc) 2163958
checking 'gblur' .............................. PASS (c2c22f114f9ac87d) 2237219
checking 'filter2' ............................ PASS (0245e31021e7583c) 56904871
checking 'medianFilter' ....................... PASS (24f248c2c56e7772) 2231438
checking 'equalize' ........................... PASS (97693dcd997265d1) 2447139
checking 'erode' .............................. PASS (5b04187576514eec) 1121204
checking 'dilate' ............................. PASS (4897aaa0d40c4fb8) 2104588
checking 'opening' ............................ PASS (cb86eac9754dbac1) 1451050
checking 'closing' ............................ PASS (13b4d846ef6a77dd) 1569448
checking 'whiteTopHat' ........................ PASS (1c856cc6a52ed865) 12004.54
checking 'blackTopHat' ........................ PASS (f74244f5c4295d35) 20296.87
checking 'selfComplementaryTopHat' ............ PASS (f23286411d6929f7) 4469404
checking 'distmap' ............................ PASS (ff3b2754a2aa8eb3) 7464344
checking 'watershed' .......................... PASS (cd9ef36f457c5d89) 1541186
checking 'floodFill' .......................... PASS (60d288f662756f97) 2234521
checking 'fillHull' ........................... PASS (c15b137f0122c2ee) 1541186
checking 'propagate' .......................... PASS (503cd7ed6238770e) 8948876
checking 'toRGB' .............................. PASS (5a32f2aceec9a146) 20279146
checking 'rgbImage' ........................... PASS (19e0ea95d787d11c) 10796552
checking 'colormap' ........................... PASS (62fb056f168823de) 22585273
checking 'combine' ............................ PASS (67fe5c370ca3a18d) 8992851
checking 'combine' ............................ PASS (41f451bdd6a63a8f) 56431472
checking 'tile' ............................... PASS (0581a6216e8e50e0) 72664167
checking 'untile' ............................. PASS (4e208afef7f298bd) 60048605
checking 'abind' .............................. PASS (e3feb875241cebc2) 9273358
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
> ## test: Image subclass
> ImageSubclass <- setClass ("ImageSubclass", contains = "Image", slots = c(foo = "character"))
> x <- ImageSubclass(x, foo="bar")
> testEBImageFunctions(x)
new test (hash=9b67f57c77f74d34)
checking 'show' ............................... PASS (63597c3473b56977) NA
checking 'print' .............................. PASS (1cd88fa9e1ff084e) NA
checking 'hist' ............................... PASS (885aba01ae2954f5) c984b74f904ca3b0
checking '>' .................................. PASS (8213f4f8b30b3c46) 1541186
checking '+' .................................. PASS (d9da0200176ead52) 4466272
checking '/' .................................. PASS (c5360d5612508ba0) 1116568
checking '*' .................................. PASS (d9da0200176ead52) 4466272
checking 'median' ............................. PASS (06af3e4c86ccda6d) 0.3823529
checking 'quantile' ........................... PASS (11ef7960975f6975) 8.139216
checking 'Image' .............................. PASS (e6ae9fe3a69fec2c) 2233136
checking 'as.Image' ........................... PASS (2a321f78219fa026) 2233136
checking 'is.Image' ........................... PASS (e3aef3409e870c0e) 0.9
checking 'imageData' .......................... PASS (6a221a6a2cec815a) 2233136
checking 'imageData<-' ........................ PASS (9b67f57c77f74d34) 2233136
checking 'as.raster' .......................... PASS (73a5fd711e0edd14) NA
checking 'colorMode<-' ........................ PASS (9b67f57c77f74d34) 2233136
checking 'numberOfFrames' ..................... PASS (d9914b6bdfe88a1d) 5.9
checking 'getFrames' .......................... PASS (e9438bf3afe19fef) 5aadb4894eade0a0
checking 'display' ............................ PASS (d28e3e75eed04056) c204a94517b6e86e
checking 'display' ............................ PASS (d956c282ac7180e4) -0.1
checking 'image' .............................. PASS (d956c282ac7180e4) -0.1
checking 'drawCircle' ......................... PASS (88969323fe4011cb) 2502013
checking '[' .................................. PASS (856f5f5a7828a96f) 41200.75
checking 'resize' ............................. PASS (22d4ff5205c02f14) 72772706
checking 'rotate' ............................. PASS (3e6dee126668bb5a) 3978266
checking 'flip' ............................... PASS (753308a7b510662f) 2296325
checking 'flop' ............................... PASS (1ea0c6126c86d976) 2231772
checking 'translate' .......................... PASS (c3111aabac6df5c8) 3827517
checking 'affine' ............................. PASS (559df6f741145f7f) 219714.6
checking 'transpose' .......................... PASS (d9282e9071f27e10) 2284582
checking 'thresh' ............................. PASS (b51eea6755dfd65a) 1426674
checking 'channel' ............................ PASS (9b67f57c77f74d34) 2233136
checking 'otsu' ............................... PASS (2cdec937ebdb0543) 9.425391
checking 'bwlabel' ............................ PASS (edce7604823b90a7) 2016822
checking 'colorLabels' ........................ PASS (05cf97699b52f053) 15969784
checking 'stackObjects' ....................... PASS (bbe84601c71da500) 2575847
checking 'stackObjects' ....................... PASS (d956c282ac7180e4) -0.1
checking 'paintObjects' ....................... PASS (944b58c80d127777) 2379341
checking 'rmObjects' .......................... PASS (1ed59ae8eb61aef6) 1934575
checking 'reenumerate' ........................ PASS (1ed59ae8eb61aef6) 1934575
checking 'reenumerate' ........................ PASS (edce7604823b90a7) 2016822
checking 'computeFeatures' .................... PASS (cddeb53183f0a518) 734993.9
checking 'computeFeatures' .................... PASS (8cd691a663f460c1) 9bc95f30143c0aa0
checking 'ocontour' ........................... PASS (3a230e30e8d15bee) bd10c4b443e2c5c0
checking 'localCurvature' ..................... PASS (a1d19191deda947d) 315e34c611de2b7d
checking 'normalize' .......................... PASS (9ace81a69fc88c37) 2526618
checking 'normalize' .......................... PASS (2a78b599de5c2ae9) 2163958
checking 'gblur' .............................. PASS (0d226d91f7036796) 2237219
checking 'filter2' ............................ PASS (7cb701d185d8631b) 56904871
checking 'medianFilter' ....................... PASS (37328d9ce26ed388) 2231438
checking 'equalize' ........................... PASS (05fc2423af12b77a) 2447139
checking 'erode' .............................. PASS (17fcd8b3a8de8535) 1121204
checking 'dilate' ............................. PASS (715c930769bb9119) 2104588
checking 'opening' ............................ PASS (1ef38f55606cdbf4) 1451050
checking 'closing' ............................ PASS (66cb111962e57366) 1569448
checking 'whiteTopHat' ........................ PASS (66e080c20ad98021) 12004.54
checking 'blackTopHat' ........................ PASS (c8b5fb6a0e1d3959) 20296.87
checking 'selfComplementaryTopHat' ............ PASS (d91b85d0f726e766) 4469404
checking 'distmap' ............................ PASS (4ced93e5efc06917) 7464344
checking 'watershed' .......................... PASS (9c1a4d5672652853) 1541186
checking 'floodFill' .......................... PASS (d9a38a5952fe360e) 2234521
checking 'fillHull' ........................... PASS (8213f4f8b30b3c46) 1541186
checking 'propagate' .......................... PASS (0731a1de5ddabcc4) 8948876
checking 'toRGB' .............................. PASS (c62b6c6a269ea1eb) 20279146
checking 'rgbImage' ........................... PASS (27eec26383a0bc15) 10796552
checking 'colormap' ........................... PASS (eef6d0395d7fe0e7) 22585273
checking 'combine' ............................ PASS (5b4994ce3c695b2e) 8992851
checking 'combine' ............................ PASS (03e050af1c7e1af2) 56431472
checking 'tile' ............................... PASS (db685d6eb3480813) 72664167
checking 'untile' ............................. PASS (0e362c45443a3ec0) 60048605
checking 'abind' .............................. PASS (add8d4baab35a5f9) 9273358
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
> proc.time()
user system elapsed
2.956 0.259 6.184
EBImage.Rcheck/tests/test.Rout.save
R version 3.4.2 (2017-09-28) -- "Short Summer"
Copyright (C) 2017 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> ## cat tests/test.R | R --vanilla &>tests/test.Rout.save
> library("EBImage")
>
> set.seed(0) # make random color permutations in 'colorLabels' reproducible
> .digits = floor(-log10(.Machine$double.eps^.5) - 1)
>
> ## returns a hashcode given an object
> hash = function (x) .Call(digest:::digest_impl, serialize(x, connection=NULL, ascii=FALSE, xdr=FALSE), 7L, -1L, 14L, 0L, 0L, PACKAGE="digest")
>
> hash.old <- function(x) {
+ if (is.list(x)) hash(sapply(x,hash))
+ else {
+ xd <- as.numeric(x)
+ xd <- xd[!is.nan(xd)]
+ if (is.matrix(xd)) sum(xd*(1:length(xd))) + 0.7*hash(dim(xd))
+ else sum(xd*(1:length(xd))) - 0.1
+ }
+ }
>
> ## try to evaluate fun(x,...)
> check <- function(fun, x, ..., capture.output=FALSE, suppressWarnings=FALSE, suppressMessages=FALSE, expectError=FALSE, round=FALSE, debug=FALSE) {
+ passed <- TRUE
+
+ cat(sprintf("checking \'%s\' %s ", fun, paste(rep(".", 35L-nchar(fun)), collapse = "")))
+
+ expr = quote(do.call(fun,c(list(x),list(...))))
+ if ( isTRUE(capture.output) ) expr = call("capture.output", expr)
+ if ( isTRUE(suppressWarnings) ) expr = call("suppressWarnings", expr)
+ if ( isTRUE(suppressMessages) ) expr = call("suppressMessages", expr)
+
+ y <- try(eval(expr), silent=TRUE)
+
+ if ( (class(y)=="try-error" && !isTRUE(expectError) ) || ( is.Image(y) && !validObject(y)) ) {
+ y <- NULL
+ passed <- FALSE
+ }
+
+ if (passed) {
+ if ( isTRUE(round) && class(y)!="try-error")
+ y = if ( is.list(y) ) lapply(y, round, digits=.digits) else round(y, digits = .digits)
+ cat("PASS (", hash(y), ") ", hash.old(y), "\n", sep="")
+ }
+ else cat("FAIL\n")
+
+ if ( isTRUE(debug) ) {
+ if (is.Image(y)) show(y)
+ if (is.array(y)) display(y, all=TRUE, interpolate=FALSE)
+ else if (is.character(y)) cat(y, sep="\n")
+ }
+
+ y
+ }
>
> checkIO <- function(name) {
+ cat("checking IO for \'", name, "\' ... ", sep="")
+ x = get(name)
+ y = FALSE
+ if ( !is.null(x) ) {
+ y <- try({
+ xx <- readImage(writeImage(x, tempfile("", fileext = ".tif")))
+ dimnames(xx) <- dimnames(x)
+ identical(x, xx)
+ }, silent=TRUE)
+ }
+ if ( isTRUE(y) ) cat("PASS\n") else cat("FAIL\n")
+ invisible(y)
+ }
>
> testIOFunctions <- function(...) invisible(lapply(list(...), function(y) checkIO(y)))
>
> testEBImageFunctions <- function(x) {
+ cat("new test (hash=", hash(x), ")\n", sep="")
+
+ z <- check("show", x, capture.output=TRUE)
+ z <- check("print", x, short=TRUE, capture.output=TRUE)
+ if ( typeof(x)=="logical" )
+ z <- check("hist", EBImage:::castImage(x), breaks = c(0, .5, 1))
+ else
+ z <- check("hist", x)
+
+ ## pixel arithmetic
+ z <- check(">", x, 0.5)
+ z <- check("+", x, x)
+ z <- check("/", x, 2)
+ z <- check("*", 2L, x)
+ z <- check("median", x)
+ z <- check("quantile", x)
+
+ ## image methods
+ z <- check("Image", x, colormode="Color")
+ z <- check("as.Image", x)
+ z <- check("is.Image", x)
+ z <- check("imageData", x)
+ z <- check("imageData<-", x, z)
+ z <- check("as.raster", x)
+ z <- check("colorMode<-", x, Grayscale, suppressWarnings=TRUE)
+ y <- check("numberOfFrames", x, type="render")
+ z <- if ( y==1L ) check("getFrames", x, 1L, "render") else check("getFrames", x)
+ z <- check("display", x, method = "browser", tempDir = file.path(dirname(tempdir()), "EBImage_tmp"))
+ if ( y>2L ) {
+ z <- check("display", x, method = "raster", all = TRUE)
+ z <- check("image", x, i = 3L)
+ }
+ else {
+ z <- if (y==1L) check("display", x, method = "raster") else check("display", x, method = "raster", frame = 2L, suppressMessages=TRUE)
+ z <- check("image", x, suppressMessages=TRUE)
+ }
+
+ ## drawCircle
+ d <- dim(x)
+ c.x <- ceiling(d[1L]/2)
+ c.y <- ceiling(d[2L]/2)
+ radius <- max(c.x-1, 1)
+ nf <- numberOfFrames(x, "render")
+ fill <- nf > 1
+ col <- if ( colorMode(x)==Color ) "yellow" else 1
+ z <- check("drawCircle", x, c.x, c.x, radius, col, fill, nf)
+
+ ## subset
+ sub <- list(x, 1:min(10,d[1L]), 1:min(7,d[2L]))
+ if (length(d)>2) sub <- c(sub, rep(TRUE, length(d)-2))
+ z <- do.call("check", c("[", sub))
+
+ ## spatial transform
+ z <- check("resize", x, 137, 22)
+ z <- check("rotate", x, 20)
+ z <- check("flip", x)
+ z <- check("flop", x)
+ z <- check("translate", x, c(-7, 5), bg.col=1)
+ z <- check("affine", x, matrix(c(-7, 5, 0.1, -0.2, 0.3, 1), ncol=2L))
+ z <- check("transpose", x)
+
+ ## segmentation
+ fd = pmin(5, (d[1:2]-1)/2)
+ z <- check("thresh", x, w=fd[1L], h=fd[2L])
+ y <- check("channel", x, "luminance")
+ z <- check("otsu", y)
+ y <- suppressWarnings(normalize(y, separate=FALSE))
+ y <- check("bwlabel", y > 0.5)
+ z <- check("colorLabels", y, suppressWarnings=TRUE)
+ z <- check("stackObjects", y, x)
+ z <- check("stackObjects", Image(dim=dim(y)), x)
+ cls <- if ( colorMode(x)==Color ) TRUE else FALSE
+ z <- check("paintObjects", y, x, col=c("#ff00ff", "#ffff00"), opac=c(1.0, 0.5), thick=cls, closed=cls)
+ z <- check("rmObjects", y, as.list(seq_len(numberOfFrames(y))), cls)
+ z <- check("reenumerate", z)
+ z <- check("reenumerate", y)
+
+ ## features
+ x1 <- getFrame(x, 1)
+ x2 <- list(x=x1, y=2*x1)
+ y1 <- getFrame(y, 1)
+ expandRef <- if ( min(dim(x1)) > 31L ) function(ref, refnames) standardExpandRef(ref, refnames, gblob(n=31L)) else NULL
+ z <- check("computeFeatures", y1, x2, expandRef = expandRef, round = !is.null(expandRef))
+ z <- check("computeFeatures", y1, x2, expandRef = expandRef, properties = TRUE)
+
+ ## curvature
+ y <- check("ocontour", x>0.5)
+ if (length(y) > 0L ) z <- check("localCurvature", y[[1L]], round=TRUE)
+
+ ## filtering
+ z <- check("normalize", x, suppressWarnings=TRUE)
+ z <- check("normalize", x, inputRange=c(0.1, 0.9), suppressWarnings=TRUE)
+ z <- check("gblur", x, sigma=1, expectError=min(d)<7, round=TRUE)
+ y <- if (cls) "replicate" else if (nf>1) 0.5 else "circular"
+ z <- check("filter2", x, array(1, dim=c(5, 5)), y, round=TRUE)
+ z <- check("medianFilter", x, 2)
+ z <- check("equalize", x, suppressWarnings=TRUE)
+
+ ## morphological operations
+ y <- x > 0.5
+ z <- check("erode", y)
+ z <- check("dilate", y, makeBrush(5, 'disc'))
+ z <- check("opening", y, makeBrush(7, 'line'))
+ z <- check("closing", y, makeBrush(4, 'line', angle=0), suppressWarnings=TRUE)
+ z <- check("whiteTopHat", x, makeBrush(3, 'box'))
+ z <- check("blackTopHat", x, makeBrush(5, 'disc'))
+ z <- check("selfComplementaryTopHat", x)
+ z <- check("distmap", y)
+ z <- check("watershed", z)
+ z <- check('floodFill', x, c(5, 5), 0.5)
+ z <- check('fillHull', y)
+
+ ## propagate
+ y <- thresh(x, w=fd[1L], h=fd[2L], offset=0.02)
+ y <- fillHull(y)
+ y <- bwlabel(y)
+ z <- check("propagate", x, y, x>0.5)
+
+ ## colorspace
+ z <- check("toRGB", x)
+ z <- check("rgbImage", x, x>0.5)
+ z <- check("colormap", channel(x, "luminance"), heat.colors(16L))
+
+ ## image stacking, combining, tiling
+ y <- check("combine", list(NULL, x, x, NULL, NULL))
+ z <- check("combine", x, y, y)
+ y <- check("tile", z, nx=3)
+ z <- check("untile", y, c(3, 2))
+ y <- check("abind", list(x, x), along=length(d)+1L)
+ cat("\n")
+ }
>
>
> ## check error handling
> try.readImage <- function(...) tryCatch(suppressWarnings(readImage(...)), error = function(e) NULL)
> mock <- try.readImage(system.file("images", package="EBImage"), type="png")
> mock <- try.readImage("http://www.huber.embl.de/EBImage/missing.file ", type="png")
>
> ## single greyscale and color images
> sample <- try.readImage(system.file("images","sample.png", package="EBImage"))
> sample.color <- try.readImage(system.file("images","sample-color.png", package="EBImage"))
> ## multi-frame image stack
> f = system.file("images","nuclei.tif", package="EBImage")
> nuclei = try.readImage(c(f, f))
> ## test reading from URL
> logo <- try.readImage("http://www.huber.embl.de/EBImage/logo.png")
>
> ## test: IO operations
> testIOFunctions("sample", "sample.color", "nuclei", "logo")
checking IO for 'sample' ... PASS
checking IO for 'sample.color' ... PASS
checking IO for 'nuclei' ... PASS
checking IO for 'logo' ... PASS
>
> ## test: black image
> testEBImageFunctions(Image(0, c(8, 8)))
new test (hash=bb3d006dd4423285)
checking 'show' ............................... PASS (c60852b2f4b4b9e3) NA
checking 'print' .............................. PASS (01ec99e74b854ba0) NA
checking 'hist' ............................... PASS (8c46196952e29db3) 34846b0bcea9feb4
checking '>' .................................. PASS (1b5285e59ce84fa0) -0.1
checking '+' .................................. PASS (bb3d006dd4423285) -0.1
checking '/' .................................. PASS (bb3d006dd4423285) -0.1
checking '*' .................................. PASS (bb3d006dd4423285) -0.1
checking 'median' ............................. PASS (f5699b21f198d2c3) -0.1
checking 'quantile' ........................... PASS (003bcd6206f48eaa) -0.1
checking 'Image' .............................. PASS (99ce97a369121647) -0.1
checking 'as.Image' ........................... PASS (bb3d006dd4423285) -0.1
checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
checking 'imageData' .......................... PASS (b51b95b0ba6f4dce) -0.1
checking 'imageData<-' ........................ PASS (bb3d006dd4423285) -0.1
checking 'as.raster' .......................... PASS (1675cda1d5c380fa) NA
checking 'colorMode<-' ........................ PASS (bb3d006dd4423285) -0.1
checking 'numberOfFrames' ..................... PASS (96180b4a6b132e65) 0.9
checking 'getFrames' .......................... PASS (d6919177c682b8b7) 14ff3acc3c64b912
checking 'display' ............................ PASS (8c4f07b8386609ca) 9a746e3b1818a41e
checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
checking 'drawCircle' ......................... PASS (f78ee95d7e176d93) 447.9
checking '[' .................................. PASS (7e14c53ed4d31621) -0.1
checking 'resize' ............................. PASS (a1c9da3458e151e8) -0.1
checking 'rotate' ............................. PASS (6ace606563c0af26) -0.1
checking 'flip' ............................... PASS (bb3d006dd4423285) -0.1
checking 'flop' ............................... PASS (bb3d006dd4423285) -0.1
checking 'translate' .......................... PASS (574e9cac8770a1fd) 1932.9
checking 'affine' ............................. PASS (bb3d006dd4423285) -0.1
checking 'transpose' .......................... PASS (bb3d006dd4423285) -0.1
checking 'thresh' ............................. PASS (15bf2ee33450c598) -0.1
checking 'channel' ............................ PASS (bb3d006dd4423285) -0.1
checking 'otsu' ............................... PASS (cbe8a6c6aa2e8245) -0.09804688
checking 'bwlabel' ............................ PASS (15bf2ee33450c598) -0.1
checking 'colorLabels' ........................ PASS (5cb6a857d91ed0ea) -0.1
checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
checking 'paintObjects' ....................... PASS (bb3d006dd4423285) -0.1
checking 'rmObjects' .......................... PASS (15bf2ee33450c598) -0.1
checking 'reenumerate' ........................ PASS (15bf2ee33450c598) -0.1
checking 'reenumerate' ........................ PASS (15bf2ee33450c598) -0.1
checking 'computeFeatures' .................... PASS (57f54e3531a18f4e) -0.1
checking 'computeFeatures' .................... PASS (6dc4c63dde7e7828) 32d95b1456f80f68
checking 'ocontour' ........................... PASS (236bd4454cc8e13c) 236bd4454cc8e13c
checking 'normalize' .......................... PASS (bb3d006dd4423285) -0.1
checking 'normalize' .......................... PASS (bb3d006dd4423285) -0.1
checking 'gblur' .............................. PASS (bb3d006dd4423285) -0.1
checking 'filter2' ............................ PASS (bb3d006dd4423285) -0.1
checking 'medianFilter' ....................... PASS (bb3d006dd4423285) -0.1
checking 'equalize' ........................... PASS (bb3d006dd4423285) -0.1
checking 'erode' .............................. PASS (1b5285e59ce84fa0) -0.1
checking 'dilate' ............................. PASS (1b5285e59ce84fa0) -0.1
checking 'opening' ............................ PASS (1b5285e59ce84fa0) -0.1
checking 'closing' ............................ PASS (1b5285e59ce84fa0) -0.1
checking 'whiteTopHat' ........................ PASS (bb3d006dd4423285) -0.1
checking 'blackTopHat' ........................ PASS (bb3d006dd4423285) -0.1
checking 'selfComplementaryTopHat' ............ PASS (bb3d006dd4423285) -0.1
checking 'distmap' ............................ PASS (bb3d006dd4423285) -0.1
checking 'watershed' .......................... PASS (15bf2ee33450c598) -0.1
checking 'floodFill' .......................... PASS (02f684c8d407c0f3) 1039.9
checking 'fillHull' ........................... PASS (1b5285e59ce84fa0) -0.1
checking 'propagate' .......................... PASS (15bf2ee33450c598) -0.1
checking 'toRGB' .............................. PASS (5cb6a857d91ed0ea) -0.1
checking 'rgbImage' ........................... PASS (5cb6a857d91ed0ea) -0.1
checking 'colormap' ........................... PASS (4fc03a2c05330d87) 2079.9
checking 'combine' ............................ PASS (7587cd4863b3f3d0) -0.1
checking 'combine' ............................ PASS (8cc517353533c670) -0.1
checking 'tile' ............................... PASS (9c28fe28dabc9dc0) 42140.88
checking 'untile' ............................. PASS (f57349ddce21e8e1) 16809.31
checking 'abind' .............................. PASS (7587cd4863b3f3d0) -0.1
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
> ## test: white image
> testEBImageFunctions(Image(1L, c(5, 5)))
new test (hash=fd2903042f6577db)
checking 'show' ............................... PASS (d5cb02fa53f44540) NA
checking 'print' .............................. PASS (19e6cb20d3a1bbed) NA
checking 'hist' ............................... PASS (92c01a74babbd9d2) 885b2aa14f6149d7
checking '>' .................................. PASS (57132767bf0cf5c4) 324.9
checking '+' .................................. PASS (78a44d6226d9747a) 649.9
checking '/' .................................. PASS (35e25cdc915f220c) 162.4
checking '*' .................................. PASS (78a44d6226d9747a) 649.9
checking 'median' ............................. PASS (96180b4a6b132e65) 0.9
checking 'quantile' ........................... PASS (e438e836956ab833) 14.9
checking 'Image' .............................. PASS (25cb6efefa0c888d) 324.9
checking 'as.Image' ........................... PASS (fd2903042f6577db) 324.9
checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
checking 'imageData' .......................... PASS (8657532cd462ea81) 324.9
checking 'imageData<-' ........................ PASS (fd2903042f6577db) 324.9
checking 'as.raster' .......................... PASS (f789919d8c93fb15) NA
checking 'colorMode<-' ........................ PASS (fd2903042f6577db) 324.9
checking 'numberOfFrames' ..................... PASS (96180b4a6b132e65) 0.9
checking 'getFrames' .......................... PASS (5fc2af241f80dfe3) 792ca128c76659ed
checking 'display' ............................ PASS (19741a401daf92e2) e4e805547bbe7024
checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
checking 'drawCircle' ......................... PASS (545d29ae11f62e79) 324.9
checking '[' .................................. PASS (fd2903042f6577db) 324.9
checking 'resize' ............................. PASS (066442c79b5dbc5d) 4543605
checking 'rotate' ............................. PASS (6fef9b3e4085e72c) 483.6843
checking 'flip' ............................... PASS (fd2903042f6577db) 324.9
checking 'flop' ............................... PASS (fd2903042f6577db) 324.9
checking 'translate' .......................... PASS (545d29ae11f62e79) 324.9
checking 'affine' ............................. PASS (dc78180c379f20d2) 39.9
checking 'transpose' .......................... PASS (fd2903042f6577db) 324.9
checking 'thresh' ............................. PASS (9a58bf6b1ef39788) -0.1
checking 'channel' ............................ PASS (fd2903042f6577db) 324.9
checking 'otsu' ............................... PASS (f397fccddb916350) 0.8980469
checking 'bwlabel' ............................ PASS (fd2903042f6577db) 324.9
checking 'colorLabels' ........................ PASS (5a10b69b9bb71739) 2849.9
checking 'stackObjects' ....................... PASS (8f1472c017e2814c) 324.9
checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
checking 'paintObjects' ....................... PASS (51f47541d96a6ecf) 270.7333
checking 'rmObjects' .......................... PASS (9a58bf6b1ef39788) -0.1
checking 'reenumerate' ........................ PASS (9a58bf6b1ef39788) -0.1
checking 'reenumerate' ........................ PASS (fd2903042f6577db) 324.9
checking 'computeFeatures' .................... PASS (559dfc74a97494a3) 950932.9
checking 'computeFeatures' .................... PASS (6dc4c63dde7e7828) 32d95b1456f80f68
checking 'ocontour' ........................... PASS (2663ed016907f460) 2cd2b9ad99f98fd3
checking 'localCurvature' ..................... PASS (80236128c43c5c64) aa70763bde359b48
checking 'normalize' .......................... PASS (545d29ae11f62e79) 324.9
checking 'normalize' .......................... PASS (545d29ae11f62e79) 324.9
checking 'gblur' .............................. PASS (19cc14ba61b7caea) NA
checking 'filter2' ............................ PASS (a98d049f987b512a) 8124.9
checking 'medianFilter' ....................... PASS (545d29ae11f62e79) 324.9
checking 'equalize' ........................... PASS (fd2903042f6577db) 324.9
checking 'erode' .............................. PASS (57132767bf0cf5c4) 324.9
checking 'dilate' ............................. PASS (57132767bf0cf5c4) 324.9
checking 'opening' ............................ PASS (57132767bf0cf5c4) 324.9
checking 'closing' ............................ PASS (57132767bf0cf5c4) 324.9
checking 'whiteTopHat' ........................ PASS (9a58bf6b1ef39788) -0.1
checking 'blackTopHat' ........................ PASS (9a58bf6b1ef39788) -0.1
checking 'selfComplementaryTopHat' ............ PASS (78a44d6226d9747a) 649.9
checking 'distmap' ............................ PASS (2690b089a32348c7) Inf
checking 'watershed' .......................... PASS (fd2903042f6577db) 324.9
checking 'floodFill' .......................... PASS (9a58bf6b1ef39788) -0.1
checking 'fillHull' ........................... PASS (57132767bf0cf5c4) 324.9
checking 'propagate' .......................... PASS (9a58bf6b1ef39788) -0.1
checking 'toRGB' .............................. PASS (c8f79be3016a4f30) 2849.9
checking 'rgbImage' ........................... PASS (04e5727b08bf45cb) 1274.9
checking 'colormap' ........................... PASS (465b64f5769d9429) 2652.253
checking 'combine' ............................ PASS (4d32f0cd424c46ed) 1274.9
checking 'combine' ............................ PASS (d235aa9dfa5f7f28) 7874.9
checking 'tile' ............................... PASS (d78128e72e9c8cfb) 24420.64
checking 'untile' ............................. PASS (2f982bd94f9d06ba) 10445.49
checking 'abind' .............................. PASS (4d32f0cd424c46ed) 1274.9
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
4: In hash.old(y) : NAs introduced by coercion
>
> ## test: 2D Grayscale 64x48
> x <- nuclei[50:113,208:255,2]
> testEBImageFunctions(as.array(x))
new test (hash=ea1a665d75817fbb)
checking 'show' ............................... PASS (642a853c4a9fb245) NA
checking 'print' .............................. PASS (642a853c4a9fb245) NA
checking 'hist' ............................... PASS (758d77d39292aceb) 22261eb2334cd65e
checking '>' .................................. PASS (b630618a382dd149) 1217568
checking '+' .................................. PASS (78bcec8b0be50e22) 2940144
checking '/' .................................. PASS (eaac0e8ec321e267) 735035.9
checking '*' .................................. PASS (78bcec8b0be50e22) 2940144
checking 'median' ............................. PASS (0ba48ebb83d20dcf) 0.04509804
checking 'quantile' ........................... PASS (922eedf2ceb73c21) 7.331373
checking 'Image' .............................. PASS (930c159d012125dd) 1470072
checking 'as.Image' ........................... PASS (d2785eea34628f36) 1470072
checking 'is.Image' ........................... PASS (7a36fa498bbfcb30) -0.1
checking 'imageData' .......................... PASS (ea1a665d75817fbb) 1470072
checking 'imageData<-' ........................ PASS (ea1a665d75817fbb) 1470072
checking 'as.raster' .......................... PASS (92e268a98a202d0d) NA
checking 'colorMode<-' ........................ PASS (2f347dbc7d4df203) NA
checking 'numberOfFrames' ..................... PASS (96180b4a6b132e65) 0.9
checking 'getFrames' .......................... PASS (c8a1bed0f342ba9c) f9df249b9d461561
checking 'display' ............................ PASS (e5abc9317013ef0f) 4597ff5701547c38
checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
checking 'drawCircle' ......................... PASS (d3ac30a887c990f0) 1607165
checking '[' .................................. PASS (9bb7b574fc489848) 48.94314
checking 'resize' ............................. PASS (00fab9ec40eb5e2f) 1419476
checking 'rotate' ............................. PASS (447c32314cc4e9d7) 2493977
checking 'flip' ............................... PASS (a8c542a26b0874e8) 1195977
checking 'flop' ............................... PASS (7e68dec7614712d2) 1462119
checking 'translate' .......................... PASS (21641bbeafdcbc39) 2133961
checking 'affine' ............................. PASS (1ed86f465543429e) 54171.17
checking 'transpose' .......................... PASS (f39a2b54df5d5df8) 1522055
checking 'thresh' ............................. PASS (aed13a82eaa0d6f6) 1262811
checking 'channel' ............................ PASS (ea1a665d75817fbb) 1470072
checking 'otsu' ............................... PASS (0c822739ccd9b674) 0.3160156
checking 'bwlabel' ............................ PASS (d2978ac5475fd985) 1199387
checking 'colorLabels' ........................ PASS (0505b0b4e09d05ed) 10021713
checking 'stackObjects' ....................... PASS (f8eb9b4047e677fb) 718602.9
checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
checking 'paintObjects' ....................... PASS (f064eb914151d29d) 1447733
checking 'rmObjects' .......................... PASS (8f36486b7880f33a) -0.1
checking 'reenumerate' ........................ PASS (8f36486b7880f33a) -0.1
checking 'reenumerate' ........................ PASS (d2978ac5475fd985) 1199387
checking 'computeFeatures' .................... PASS (9dca8bdb6fc6383c) 3634215
checking 'computeFeatures' .................... PASS (3a766122214a21a8) cf1b0ac94ace207a
checking 'ocontour' ........................... PASS (ddb1a61382610e29) 0dab270d98fdbdd8
checking 'localCurvature' ..................... PASS (48edb77f99eb5e0a) a351f1682141f4de
checking 'normalize' .......................... PASS (dd024957ed9be970) 1431381
checking 'normalize' .......................... PASS (327914cc2a95292d) 1266798
checking 'gblur' .............................. PASS (ba634c0d6cb869f5) 1466231
checking 'filter2' ............................ PASS (b1783e1383b0d429) 36592176
checking 'medianFilter' ....................... PASS (f73f9cb355632e37) 1454712
checking 'equalize' ........................... PASS (3229c589865d1dd0) 2642794
checking 'erode' .............................. PASS (a808a82152309cd0) 759774.9
checking 'dilate' ............................. PASS (6ad0a88f208f30d0) 1797576
checking 'opening' ............................ PASS (14899fd17ddf0b81) 1152484
checking 'closing' ............................ PASS (8f3f27e6caed70de) 1232737
checking 'whiteTopHat' ........................ PASS (0461dfe452491caf) 18730.15
checking 'blackTopHat' ........................ PASS (8f53c6a02fcc449b) 27716.23
checking 'selfComplementaryTopHat' ............ PASS (53e3b78d71635465) 2929436
checking 'distmap' ............................ PASS (66da40cd47ec8762) 3826969
checking 'watershed' .......................... PASS (fe4e99c1bb5f9562) 2762113
checking 'floodFill' .......................... PASS (e508f01acf50e00d) 1470197
checking 'fillHull' ........................... PASS (b630618a382dd149) 1217568
checking 'propagate' .......................... PASS (9e56846cb0e2b112) 3464201
checking 'toRGB' .............................. PASS (7b33402954c29951) 12381911
checking 'rgbImage' ........................... PASS (c44ead1803e628d9) 4859544
checking 'colormap' ........................... PASS (fbcba322d3f5c951) 11126039
checking 'combine' ............................ PASS (3f46a10efaaab318) 5597376
checking 'combine' ............................ PASS (c2857e1a820b6b96) 33922678
checking 'tile' ............................... PASS (78eab32eac869231) 78718054
checking 'untile' ............................. PASS (59f8bb36c4481a79) 72597772
checking 'abind' .............................. PASS (3f46a10efaaab318) 5597376
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
4: In hash.old(y) : NAs introduced by coercion
>
> ## test: 2D Color 32x48x1
> x <- sample[1:32, 1:48]
> testEBImageFunctions(Image(as.vector(x), dim(x), Color))
new test (hash=42e4a51e3404811e)
checking 'show' ............................... PASS (c341f3b9fc1ff684) NA
checking 'print' .............................. PASS (419cec4864e97478) NA
checking 'hist' ............................... PASS (91566cadc223f9a3) 05bf2b59f2a77bb3
checking '>' .................................. PASS (c843a337bba9a51b) 988518.9
checking '+' .................................. PASS (5b9c39c8dde0f4ba) 1531522
checking '/' .................................. PASS (c8eb6e9ad11ccbd8) 382880.4
checking '*' .................................. PASS (5b9c39c8dde0f4ba) 1531522
checking 'median' ............................. PASS (1855a565fb986239) 0.5039216
checking 'quantile' ........................... PASS (3b22f40de65ddba9) 10.10392
checking 'Image' .............................. PASS (42e4a51e3404811e) 765760.9
checking 'as.Image' ........................... PASS (42e4a51e3404811e) 765760.9
checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
checking 'imageData' .......................... PASS (e5ac272d081a94e8) 765760.9
checking 'imageData<-' ........................ PASS (42e4a51e3404811e) 765760.9
checking 'as.raster' .......................... PASS (b2474ac70f11c65b) NA
checking 'colorMode<-' ........................ PASS (659e2fc3253b48a5) 765760.9
checking 'numberOfFrames' ..................... PASS (96180b4a6b132e65) 0.9
checking 'getFrames' .......................... PASS (0db71a429380e045) 2ce69e3965ee85bb
checking 'display' ............................ PASS (e02c3fc0d11fe3dd) ece292adeae37a84
checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
checking 'drawCircle' ......................... PASS (db43b8c94523e893) 782100.7
checking '[' .................................. PASS (9e53ad55777f433d) 1285.273
checking 'resize' ............................. PASS (3e691caece9a23f3) 2941770
checking 'rotate' ............................. PASS (8445c36b57d60c5d) 1247487
checking 'flip' ............................... PASS (a292f4134eba03ae) 661525.2
checking 'flop' ............................... PASS (edb212fe7ec01fae) 768451.1
checking 'translate' .......................... PASS (158cc0e28f649d32) 820434.5
checking 'affine' ............................. PASS (3aca89b692c9110c) 22238.15
checking 'transpose' .......................... PASS (32f4e3c321435048) 652051.4
checking 'thresh' ............................. PASS (bf6cf9e7f1b50aa0) 382924.9
checking 'channel' ............................ PASS (288c8c2a23d7d309) 162800.7
checking 'otsu' ............................... PASS (2634e72eb12ab864) 0.03085937
checking 'bwlabel' ............................ PASS (a53dfbd74180c15c) 832970.9
checking 'colorLabels' ........................ PASS (9aea6bf69b9535b1) 5455321
checking 'stackObjects' ....................... PASS (202a964735f173b1) 596493.9
checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
checking 'paintObjects' ....................... PASS (d729a9cd58722f9f) 919069.9
checking 'rmObjects' .......................... PASS (315db6e1904a02f2) 565.9
checking 'reenumerate' ........................ PASS (315db6e1904a02f2) 565.9
checking 'reenumerate' ........................ PASS (a53dfbd74180c15c) 832970.9
checking 'computeFeatures' .................... PASS (607eae59e3423025) 3988895
checking 'computeFeatures' .................... PASS (3a766122214a21a8) cf1b0ac94ace207a
checking 'ocontour' ........................... PASS (da840dfc876b827d) 90e46e616d6ca694
checking 'localCurvature' ..................... PASS (744209c192ca349a) 97da7b3a7c2ec717
checking 'normalize' .......................... PASS (fd0fb40ffb018169) 747801.4
checking 'normalize' .......................... PASS (4b1f8e1c8e2f7bf3) 809649.2
checking 'gblur' .............................. PASS (850f1053006670c6) 761679.3
checking 'filter2' ............................ PASS (c6d3b7ddd80521f9) 19130329
checking 'medianFilter' ....................... PASS (07a157a471910361) 765141.6
checking 'equalize' ........................... PASS (0e526b3729fc6369) 705546.8
checking 'erode' .............................. PASS (36413a22e579f0bc) 908526.9
checking 'dilate' ............................. PASS (144e48361a76b7c4) 1072658
checking 'opening' ............................ PASS (b7c1eac6357c6e80) 985798.9
checking 'closing' ............................ PASS (2e4462eb216d9848) 988727.9
checking 'whiteTopHat' ........................ PASS (9db3096e14961ab7) 3572.998
checking 'blackTopHat' ........................ PASS (bf87d7286ea29ad9) 7139.473
checking 'selfComplementaryTopHat' ............ PASS (b77a4b378692f404) 1533178
checking 'distmap' ............................ PASS (f6300a4f340ae60a) 12740449
checking 'watershed' .......................... PASS (8a9f971d0fd151b0) 988518.9
checking 'floodFill' .......................... PASS (58b50ac20366b30b) 765755.4
checking 'fillHull' ........................... PASS (c843a337bba9a51b) 988518.9
checking 'propagate' .......................... PASS (c9ccd5b308eb7ef1) 26630579
checking 'toRGB' .............................. PASS (42e4a51e3404811e) 765760.9
checking 'rgbImage' ........................... PASS (3e4ef74fd42ad9d7) 3520680
checking 'colormap' ........................... PASS (d2139029833173d7) 1816912
checking 'combine' ............................ PASS (475166958acc7172) 2960568
checking 'combine' ............................ PASS (dcd2456fbb97967f) 18119267
checking 'tile' ............................... PASS (da0d33a63c42b563) 33061491
checking 'untile' ............................. PASS (3268a8970f502c72) 27788327
checking 'abind' .............................. PASS (6fd94295b094e0dd) 2960568
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
> ## test: 3D Color 65x17x3
> x <- sample.color[1:65, 1:17,]
> testEBImageFunctions(x)
new test (hash=de81d0d989193946)
checking 'show' ............................... PASS (2e8e7d2423e3ccfe) NA
checking 'print' .............................. PASS (6ab730d47def3609) NA
checking 'hist' ............................... PASS (6a57fc1cd042ba00) 65b5b051743defa8
checking '>' .................................. PASS (53e61ab2bda88b20) 1058553
checking '+' .................................. PASS (bfc8079a28d79b4c) 4072301
checking '/' .................................. PASS (b55c46146fdfe46d) 1018075
checking '*' .................................. PASS (bfc8079a28d79b4c) 4072301
checking 'median' ............................. PASS (1bc9c6651e4507c8) 0.2333333
checking 'quantile' ........................... PASS (686379af319f166a) 7.280392
checking 'Image' .............................. PASS (de81d0d989193946) 2036151
checking 'as.Image' ........................... PASS (de81d0d989193946) 2036151
checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
checking 'imageData' .......................... PASS (cc315d22f9180202) 2036151
checking 'imageData<-' ........................ PASS (de81d0d989193946) 2036151
checking 'as.raster' .......................... PASS (9f57220e155de221) NA
checking 'colorMode<-' ........................ PASS (908b90694e179a06) 2036151
checking 'numberOfFrames' ..................... PASS (96180b4a6b132e65) 0.9
checking 'getFrames' .......................... PASS (1d27d730987b7a26) 8e44d4ba87d4aa02
checking 'display' ............................ PASS (0a11225efa5072ae) df8baf2e444e61aa
checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
checking 'drawCircle' ......................... PASS (7dca62c4ac89e623) 2049936
checking '[' .................................. PASS (c393e7deb8110d2e) 9950.096
checking 'resize' ............................. PASS (75a7216227f8dbfa) 15155777
checking 'rotate' ............................. PASS (cba5275a49d1c025) 4525312
checking 'flip' ............................... PASS (ce5674ff635ed106) 1977928
checking 'flop' ............................... PASS (c9a027c754ade888) 2048664
checking 'translate' .......................... PASS (98b2270654265063) 2998417
checking 'affine' ............................. PASS (091470a40c4fba44) 226067.6
checking 'transpose' .......................... PASS (2a083c731f2328d6) 1907377
checking 'thresh' ............................. PASS (aeb34a5300761161) 954376.9
checking 'channel' ............................ PASS (628995dc542023b6) 257578.5
checking 'otsu' ............................... PASS (a7933cc16292d271) 0.3316406
checking 'bwlabel' ............................ PASS (f8bd68974c926eec) 230329.9
checking 'colorLabels' ........................ PASS (80dc35afde7d79d4) 1920855
checking 'stackObjects' ....................... PASS (6f9fa1b0c36f14c3) 712799.6
checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
checking 'paintObjects' ....................... PASS (1812b3a1be6f2a21) 2090128
checking 'rmObjects' .......................... PASS (cf00ced5df055ef3) -0.1
checking 'reenumerate' ........................ PASS (cf00ced5df055ef3) -0.1
checking 'reenumerate' ........................ PASS (f8bd68974c926eec) 230329.9
checking 'computeFeatures' .................... PASS (f17bea67c6db8efa) 746878.2
checking 'computeFeatures' .................... PASS (6dc4c63dde7e7828) 32d95b1456f80f68
checking 'ocontour' ........................... PASS (62edd8045dda1043) 91bbaa639ef2cb55
checking 'localCurvature' ..................... PASS (9ddeedd40b4e5c7b) a2c60afaa6d43988
checking 'normalize' .......................... PASS (0b70467017a902ca) 1788995
checking 'normalize' .......................... PASS (95a2f0d3d09f9593) 1858155
checking 'gblur' .............................. PASS (220352a03dba8eda) 2029979
checking 'filter2' ............................ PASS (4ca91f0d9cb2a1e9) 50878763
checking 'medianFilter' ....................... PASS (afb4863b9d632271) 2034604
checking 'equalize' ........................... PASS (6d80d436cf8278ec) 2942981
checking 'erode' .............................. PASS (86fbc1458f72ebfe) 830816.9
checking 'dilate' ............................. PASS (fffa10444677a5de) 1339263
checking 'opening' ............................ PASS (2502c3f605bf79f2) 1013295
checking 'closing' ............................ PASS (16dfffda0eb72d6d) 1069405
checking 'whiteTopHat' ........................ PASS (ab977dc4ab166626) 16585.63
checking 'blackTopHat' ........................ PASS (e1f6d9987bffb784) 22039.05
checking 'selfComplementaryTopHat' ............ PASS (37e1c11a042ce219) 4071763
checking 'distmap' ............................ PASS (046048efe2665db2) 6038778
checking 'watershed' .......................... PASS (5810b16b06c7a236) 1058553
checking 'floodFill' .......................... PASS (87ccae676293e02d) 2036854
checking 'fillHull' ........................... PASS (53e61ab2bda88b20) 1058553
checking 'propagate' .......................... PASS (50fd5efe0e56a631) 7755487
checking 'toRGB' .............................. PASS (de81d0d989193946) 2036151
checking 'rgbImage' ........................... PASS (cab54e5b08f3aae8) 7617867
checking 'colormap' ........................... PASS (1844757fe6d6692b) 1657338
checking 'combine' ............................ PASS (07952012d019c893) 8350133
checking 'combine' ............................ PASS (8cb162a59398a20b) 52959073
checking 'tile' ............................... PASS (498539964fb48dd4) 107188639
checking 'untile' ............................. PASS (9fb04cc414930cc6) 97994583
checking 'abind' .............................. PASS (07952012d019c893) 8350133
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
> ## test: 3D Grayscale logical 32x32x2
> x <- sample[32:63, 32:63]
> x <- x > otsu(x)
> x <- combine(x, x)
> testEBImageFunctions(x)
new test (hash=45775cc98ccde7d0)
checking 'show' ............................... PASS (17bd08c197d327bf) NA
checking 'print' .............................. PASS (86a9e2802088f094) NA
checking 'hist' ............................... PASS (b67b7652db932932) e392832c9ac4ef1a
checking '>' .................................. PASS (45775cc98ccde7d0) 1055560
checking '+' .................................. PASS (a808c74d4b8f4b1a) 2111120
checking '/' .................................. PASS (050916ceba989d59) 527779.9
checking '*' .................................. PASS (a808c74d4b8f4b1a) 2111120
checking 'median' ............................. PASS (f5699b21f198d2c3) -0.1
checking 'quantile' ........................... PASS (abb46cc6fe827b1e) 8.9
checking 'Image' .............................. PASS (5644736cfb4b41de) 1055560
checking 'as.Image' ........................... PASS (45775cc98ccde7d0) 1055560
checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
checking 'imageData' .......................... PASS (a8595646a000f9e9) 1055560
checking 'imageData<-' ........................ PASS (45775cc98ccde7d0) 1055560
checking 'as.raster' .......................... PASS (35debdd5bd091cf6) NA
checking 'colorMode<-' ........................ PASS (45775cc98ccde7d0) 1055560
checking 'numberOfFrames' ..................... PASS (0cd27cfa5ab0714e) 1.9
checking 'getFrames' .......................... PASS (8c50f91fce805fce) df388a91608fa45d
checking 'display' ............................ PASS (a69f9d95f70d6b4f) 2ed798e15d730f30
checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
checking 'drawCircle' ......................... PASS (a54d00e6ec30cdaa) 1656514
checking '[' .................................. PASS (43978c7896f345b7) 1889.9
checking 'resize' ............................. PASS (b189246d26913306) 9108608
checking 'rotate' ............................. PASS (a4a84e73999cd629) 1600126
checking 'flip' ............................... PASS (3705f945c5050495) 714439.9
checking 'flop' ............................... PASS (91665fdcc5d39ce2) 1064092
checking 'translate' .......................... PASS (6c5b0b16cf2595ee) 1105982
checking 'affine' ............................. PASS (4a6b1cf59de37216) 133467.8
checking 'transpose' .......................... PASS (9be0ad64c90eabc7) 758083.9
checking 'thresh' ............................. PASS (cf8b639ee5c91bd5) 824497.9
checking 'channel' ............................ PASS (45775cc98ccde7d0) 1055560
checking 'otsu' ............................... PASS (9966633498a5e2d8) 1.4
checking 'bwlabel' ............................ PASS (a00294e8900f15eb) 1597368
checking 'colorLabels' ........................ PASS (6dc0e9def8039903) 3525827
checking 'stackObjects' ....................... PASS (8ddf2c694201cbf1) 8889538
checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
checking 'paintObjects' ....................... PASS (f4107fd743a22ecf) 834266.6
checking 'rmObjects' .......................... PASS (07bc253bd936adb5) 1303423
checking 'reenumerate' ........................ PASS (ff441c512995c200) 1244828
checking 'reenumerate' ........................ PASS (a00294e8900f15eb) 1597368
checking 'computeFeatures' .................... PASS (1d847743be56e5a7) 416164140
checking 'computeFeatures' .................... PASS (3a766122214a21a8) cf1b0ac94ace207a
checking 'ocontour' ........................... PASS (cdb0d0c07c1e0775) b86c6546ddbffb2d
checking 'localCurvature' ..................... PASS (4c13330f1d7fcbd6) 4805cb6e9d47da01
checking 'normalize' .......................... PASS (a34cd51357995e04) 1055560
checking 'normalize' .......................... PASS (a34cd51357995e04) 1055560
checking 'gblur' .............................. PASS (f499c36c42da96ae) 1037581
checking 'filter2' ............................ PASS (e5a3d2e924e050fe) 26149148
checking 'medianFilter' ....................... PASS (ff54de12f77d64e5) 1030730
checking 'equalize' ........................... PASS (a34cd51357995e04) 1055560
checking 'erode' .............................. PASS (87a98696219eeb40) 617311.9
checking 'dilate' ............................. PASS (49a5f7a8063bdcc8) 1591594
checking 'opening' ............................ PASS (557cd0af78bc3bbe) 861145.9
checking 'closing' ............................ PASS (04eefe7f21e9b36a) 1188258
checking 'whiteTopHat' ........................ PASS (0a2dbcdbb9e396a8) 148131.9
checking 'blackTopHat' ........................ PASS (af7e8fad58a0f587) 202411.9
checking 'selfComplementaryTopHat' ............ PASS (729954d933215c8d) 2151192
checking 'distmap' ............................ PASS (8ba0b0fb6770e8a3) 3856630
checking 'watershed' .......................... PASS (0bd6a31bc6197067) 1443978
checking 'floodFill' .......................... PASS (7a8a06c4be73e522) 2057384
checking 'fillHull' ........................... PASS (d3904950b8acdb73) 1096352
checking 'propagate' .......................... PASS (6c610fe4376714f6) 1613920
checking 'toRGB' .............................. PASS (57b9a77f5a12af4f) 8499672
checking 'rgbImage' ........................... PASS (82e9189e21600e37) 4777616
checking 'colormap' ........................... PASS (244a6e10e928fb5e) 10283526
checking 'combine' ............................ PASS (fbb690c6993fed59) 3888784
checking 'combine' ............................ PASS (db4c289138cad595) 23054440
checking 'tile' ............................... PASS (b5d61ba1e08ccf53) 48846817
checking 'untile' ............................. PASS (f740856c06d69a15) 41221063
checking 'abind' .............................. PASS (dca1271130f49d13) 3888784
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
> ## test: 4D Color 33x16x3x2
> x <- sample.color[1:33, 1:16,]
> x <- combine(x, x)
> testEBImageFunctions(x)
new test (hash=7b41d26d4354fed1)
checking 'show' ............................... PASS (0e20a4fb07853778) NA
checking 'print' .............................. PASS (0b3e2b71e556d7a8) NA
checking 'hist' ............................... PASS (7266d20001b63e05) 48ff490a50be36d5
checking '>' .................................. PASS (5a6494dd882e20ae) 2013322
checking '+' .................................. PASS (78d490385e4c68e5) 4709417
checking '/' .................................. PASS (98087f12b7f61f2d) 1177354
checking '*' .................................. PASS (78d490385e4c68e5) 4709417
checking 'median' ............................. PASS (fdd3c9a35d83db2f) 0.3823529
checking 'quantile' ........................... PASS (e26e9f3ec19dd1e9) 8.139216
checking 'Image' .............................. PASS (7b41d26d4354fed1) 2354709
checking 'as.Image' ........................... PASS (7b41d26d4354fed1) 2354709
checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
checking 'imageData' .......................... PASS (242db37f6093cb73) 2354709
checking 'imageData<-' ........................ PASS (7b41d26d4354fed1) 2354709
checking 'as.raster' .......................... PASS (b47cd18dd737d179) NA
checking 'colorMode<-' ........................ PASS (739b8cc774a94061) 2354709
checking 'numberOfFrames' ..................... PASS (0cd27cfa5ab0714e) 1.9
checking 'getFrames' .......................... PASS (dfada18bf7486f49) 6bccd3af078885b1
checking 'display' ............................ PASS (713161e915733541) bcf32094ce1d3dd4
checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
checking 'drawCircle' ......................... PASS (516ff89688aa090a) 2650006
checking '[' .................................. PASS (b7ab984ac4c76be7) 40701.82
checking 'resize' ............................. PASS (19f045e2a12c3dcd) 76725662
checking 'rotate' ............................. PASS (5ca7d358dc5f6cb8) 4140744
checking 'flip' ............................... PASS (ec438fa29adb6692) 2309692
checking 'flop' ............................... PASS (189be924d5127b6d) 2358658
checking 'translate' .......................... PASS (6b8b9dffcab202c5) 3393923
checking 'affine' ............................. PASS (8490fa9d387d7f22) 301692.6
checking 'transpose' .......................... PASS (f415a850f96da517) 2303263
checking 'thresh' ............................. PASS (96c1db8a6b3c5f8f) 1549362
checking 'channel' ............................ PASS (d0059f4eaa729cb0) 287206.2
checking 'otsu' ............................... PASS (18794185be6d9049) 1.370703
checking 'bwlabel' ............................ PASS (cf48a1553a7ca557) 360413.9
checking 'colorLabels' ........................ PASS (87aec3caedd0f2b2) 3039066
checking 'stackObjects' ....................... PASS (6c9d66add9231c0b) 2472601
checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
checking 'paintObjects' ....................... PASS (a94d303375c85afc) 2558300
checking 'rmObjects' .......................... PASS (3c7c32b7c14bf399) 261782.9
checking 'reenumerate' ........................ PASS (3c7c32b7c14bf399) 261782.9
checking 'reenumerate' ........................ PASS (cf48a1553a7ca557) 360413.9
checking 'computeFeatures' .................... PASS (43ed64a6574660f3) 749353.1
checking 'computeFeatures' .................... PASS (6dc4c63dde7e7828) 32d95b1456f80f68
checking 'ocontour' ........................... PASS (0cc37fb8be6a9150) a8ef8364446f767a
checking 'localCurvature' ..................... PASS (91ac6bafe7f8c008) feedc85342708fe9
checking 'normalize' .......................... PASS (6f82aae3b180c153) 2693244
checking 'normalize' .......................... PASS (27441d4baba7c727) 2315924
checking 'gblur' .............................. PASS (6317c51db4b2e332) 2349701
checking 'filter2' ............................ PASS (ff5a03c8be20359c) 58841710
checking 'medianFilter' ....................... PASS (08a067834027edb5) 2352447
checking 'equalize' ........................... PASS (02d6a459ef536ba0) 2616480
checking 'erode' .............................. PASS (c065e093042fa687) 1547948
checking 'dilate' ............................. PASS (3ad67b8d06ebb303) 2604996
checking 'opening' ............................ PASS (789077961fab1b84) 1919386
checking 'closing' ............................ PASS (930601017e06bf69) 2038196
checking 'whiteTopHat' ........................ PASS (248102e12cde390f) 12437.36
checking 'blackTopHat' ........................ PASS (2769c6f876a888b2) 19780.97
checking 'selfComplementaryTopHat' ............ PASS (535e331642e8affe) 4711722
checking 'distmap' ............................ PASS (e9f6f8a5899a40fd) 10836360
checking 'watershed' .......................... PASS (355196749445c942) 2013322
checking 'floodFill' .......................... PASS (a23cce6e67e088ae) 2355706
checking 'fillHull' ........................... PASS (5a6494dd882e20ae) 2013322
checking 'propagate' .......................... PASS (6a54d058269b4352) 11618104
checking 'toRGB' .............................. PASS (7b41d26d4354fed1) 2354709
checking 'rgbImage' ........................... PASS (05d03bf83df83dbf) 12071186
checking 'colormap' ........................... PASS (40f159a4fec5a5e4) 2273276
checking 'combine' ............................ PASS (943e696dd062479b) 9516503
checking 'combine' ............................ PASS (5b2b6f0a51b05e18) 59844403
checking 'tile' ............................... PASS (853d179912a1e6b9) 114300809
checking 'untile' ............................. PASS (92a5de5886618db5) 105862114
checking 'abind' .............................. PASS (26faa8168a99c898) 9516503
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
> ## test: 4D Grayscale 16x33x2x3
> colorMode(x) <- Grayscale
> imageData(x) <- aperm(x, c(2L, 1L, 4L, 3L))
> testEBImageFunctions(x)
new test (hash=ea218ca35d898b4f)
checking 'show' ............................... PASS (07d544b61ec16bf1) NA
checking 'print' .............................. PASS (185b486b9fcdb3b0) NA
checking 'hist' ............................... PASS (06d171c8f173fbfa) c3d0c3b2d4df7f61
checking '>' .................................. PASS (cdeb2538f3cc7adf) 1541186
checking '+' .................................. PASS (9d2cb7572d822536) 4466272
checking '/' .................................. PASS (93c6c46f0b0e7df5) 1116568
checking '*' .................................. PASS (9d2cb7572d822536) 4466272
checking 'median' ............................. PASS (fdd3c9a35d83db2f) 0.3823529
checking 'quantile' ........................... PASS (e26e9f3ec19dd1e9) 8.139216
checking 'Image' .............................. PASS (b2c89c8bd2d8cfbb) 2233136
checking 'as.Image' ........................... PASS (ea218ca35d898b4f) 2233136
checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
checking 'imageData' .......................... PASS (85da79da2cd4332f) 2233136
checking 'imageData<-' ........................ PASS (ea218ca35d898b4f) 2233136
checking 'as.raster' .......................... PASS (f7837c7682313ed7) NA
checking 'colorMode<-' ........................ PASS (ea218ca35d898b4f) 2233136
checking 'numberOfFrames' ..................... PASS (ce8815ddd92a2bbb) 5.9
checking 'getFrames' .......................... PASS (e193a8c072f9729f) feb32c3d20c02193
checking 'display' ............................ PASS (c99fb2dbf3f4f099) 8222a6379bd22cd5
checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
checking 'drawCircle' ......................... PASS (2eeddc22da537d19) 2502013
checking '[' .................................. PASS (ca2402ebe50888e9) 41200.75
checking 'resize' ............................. PASS (c2412da2d423bb4c) 72772706
checking 'rotate' ............................. PASS (e88e2e93ce61d959) 3978266
checking 'flip' ............................... PASS (735ec4743ab3f0c4) 2296325
checking 'flop' ............................... PASS (039d65e48af245d2) 2231772
checking 'translate' .......................... PASS (6dc22f8c9da472fe) 3827517
checking 'affine' ............................. PASS (987d2bf7d6243ac5) 219714.6
checking 'transpose' .......................... PASS (70d09e0401597e51) 2284582
checking 'thresh' ............................. PASS (99ef268285d31156) 1426674
checking 'channel' ............................ PASS (ea218ca35d898b4f) 2233136
checking 'otsu' ............................... PASS (73c8c3c1a7c3a7e0) 9.425391
checking 'bwlabel' ............................ PASS (48a9facb579b630f) 2016822
checking 'colorLabels' ........................ PASS (2f81d6c90e88b2d4) 14827904
checking 'stackObjects' ....................... PASS (28c1ffc9196cbeda) 2575847
checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
checking 'paintObjects' ....................... PASS (ba568e37e29116fa) 2379341
checking 'rmObjects' .......................... PASS (150895efa1acc9af) 1934575
checking 'reenumerate' ........................ PASS (150895efa1acc9af) 1934575
checking 'reenumerate' ........................ PASS (48a9facb579b630f) 2016822
checking 'computeFeatures' .................... PASS (5f168ac8bf99f53d) 734993.9
checking 'computeFeatures' .................... PASS (6dc4c63dde7e7828) 32d95b1456f80f68
checking 'ocontour' ........................... PASS (67c938cc8c8b0a94) e0b0122d0f8dbec3
checking 'localCurvature' ..................... PASS (14e7e43044a6edce) dbbde661d27cf4d5
checking 'normalize' .......................... PASS (c6700c53a770f4dc) 2526618
checking 'normalize' .......................... PASS (321165d27d376355) 2163958
checking 'gblur' .............................. PASS (167add1590f90b31) 2237219
checking 'filter2' ............................ PASS (288a7b9238221d38) 56904871
checking 'medianFilter' ....................... PASS (12259cca79cae7e1) 2231438
checking 'equalize' ........................... PASS (8a3ab1c34c6d6b46) 2447139
checking 'erode' .............................. PASS (76903cc870b48afc) 1121204
checking 'dilate' ............................. PASS (9a465193b3c535f1) 2104588
checking 'opening' ............................ PASS (f27ee35968015aff) 1451050
checking 'closing' ............................ PASS (fc6578a91384556e) 1569448
checking 'whiteTopHat' ........................ PASS (2545dff4d9a67f18) 12004.54
checking 'blackTopHat' ........................ PASS (0bc09ee83c3b7e6b) 20296.87
checking 'selfComplementaryTopHat' ............ PASS (7271dd2d24a8b8fa) 4469404
checking 'distmap' ............................ PASS (fd74d28ff7a40bc8) 7464344
checking 'watershed' .......................... PASS (aec9e7c80b500f8a) 1541186
checking 'floodFill' .......................... PASS (c8f6a63ecc5faeb2) 2234521
checking 'fillHull' ........................... PASS (cdeb2538f3cc7adf) 1541186
checking 'propagate' .......................... PASS (2fa32c86f0afbbe9) 8948876
checking 'toRGB' .............................. PASS (7ac5c5945e1aa8b4) 20279146
checking 'rgbImage' ........................... PASS (6c13f1c0649a1b02) 10796552
checking 'colormap' ........................... PASS (fffb8d91ccca5f12) 22585273
checking 'combine' ............................ PASS (61a6f7f5c6357973) 8992851
checking 'combine' ............................ PASS (e3af2b87e81b577e) 56431472
checking 'tile' ............................... PASS (22c39d5bf0a57b26) 72664167
checking 'untile' ............................. PASS (f3dd10e639f40c64) 60048605
checking 'abind' .............................. PASS (f28d70bcf3781d08) 9273358
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
> ## test: Image subclass
> ImageSubclass <- setClass ("ImageSubclass", contains = "Image", slots = c(foo = "character"))
> x <- ImageSubclass(x, foo="bar")
> testEBImageFunctions(x)
new test (hash=2cd1b3ca941d0306)
checking 'show' ............................... PASS (ce75d078eccda68c) NA
checking 'print' .............................. PASS (e01f0947e67df522) NA
checking 'hist' ............................... PASS (06d171c8f173fbfa) c3d0c3b2d4df7f61
checking '>' .................................. PASS (8eb52b594f8cd22b) 1541186
checking '+' .................................. PASS (d0da7a47899efbc4) 4466272
checking '/' .................................. PASS (8bfccf8b88e728b0) 1116568
checking '*' .................................. PASS (d0da7a47899efbc4) 4466272
checking 'median' ............................. PASS (fdd3c9a35d83db2f) 0.3823529
checking 'quantile' ........................... PASS (e26e9f3ec19dd1e9) 8.139216
checking 'Image' .............................. PASS (b2c89c8bd2d8cfbb) 2233136
checking 'as.Image' ........................... PASS (ea218ca35d898b4f) 2233136
checking 'is.Image' ........................... PASS (29e1e263d8769b6f) 0.9
checking 'imageData' .......................... PASS (85da79da2cd4332f) 2233136
checking 'imageData<-' ........................ PASS (2cd1b3ca941d0306) 2233136
checking 'as.raster' .......................... PASS (f7837c7682313ed7) NA
checking 'colorMode<-' ........................ PASS (2cd1b3ca941d0306) 2233136
checking 'numberOfFrames' ..................... PASS (ce8815ddd92a2bbb) 5.9
checking 'getFrames' .......................... PASS (57ddf8e1c5653fa1) 578ceb264bf8c00f
checking 'display' ............................ PASS (c99fb2dbf3f4f099) 8222a6379bd22cd5
checking 'display' ............................ PASS (57f54e3531a18f4e) -0.1
checking 'image' .............................. PASS (57f54e3531a18f4e) -0.1
checking 'drawCircle' ......................... PASS (2a6138d3f6c7cf2b) 2502013
checking '[' .................................. PASS (21b006dc9b230591) 41200.75
checking 'resize' ............................. PASS (d4439ccaddffedbf) 72772706
checking 'rotate' ............................. PASS (49bab3d36db066a3) 3978266
checking 'flip' ............................... PASS (de3315d317526bf8) 2296325
checking 'flop' ............................... PASS (1746b768e1919758) 2231772
checking 'translate' .......................... PASS (eb6575b71bd228cf) 3827517
checking 'affine' ............................. PASS (6f88949e9ca0500f) 219714.6
checking 'transpose' .......................... PASS (cae5d3f85d9a6547) 2284582
checking 'thresh' ............................. PASS (6907f0b8232e5a87) 1426674
checking 'channel' ............................ PASS (2cd1b3ca941d0306) 2233136
checking 'otsu' ............................... PASS (73c8c3c1a7c3a7e0) 9.425391
checking 'bwlabel' ............................ PASS (0cd3636f1086f354) 2016822
checking 'colorLabels' ........................ PASS (3d06f02ad8d875a7) 16357947
checking 'stackObjects' ....................... PASS (3dfb061836ca6d36) 2575847
checking 'stackObjects' ....................... PASS (57f54e3531a18f4e) -0.1
checking 'paintObjects' ....................... PASS (d0e505d3ebc1fb67) 2379341
checking 'rmObjects' .......................... PASS (72c36fcb451899a7) 1934575
checking 'reenumerate' ........................ PASS (72c36fcb451899a7) 1934575
checking 'reenumerate' ........................ PASS (0cd3636f1086f354) 2016822
checking 'computeFeatures' .................... PASS (5f168ac8bf99f53d) 734993.9
checking 'computeFeatures' .................... PASS (6dc4c63dde7e7828) 32d95b1456f80f68
checking 'ocontour' ........................... PASS (67c938cc8c8b0a94) e0b0122d0f8dbec3
checking 'localCurvature' ..................... PASS (14e7e43044a6edce) dbbde661d27cf4d5
checking 'normalize' .......................... PASS (c864fc347d3e1eec) 2526618
checking 'normalize' .......................... PASS (b924aa1ced88d0b0) 2163958
checking 'gblur' .............................. PASS (41001e94fa243311) 2237219
checking 'filter2' ............................ PASS (c4dde73f4cd08626) 56904871
checking 'medianFilter' ....................... PASS (f336aae43926dd3a) 2231438
checking 'equalize' ........................... PASS (8aff651b4bfe1e2d) 2447139
checking 'erode' .............................. PASS (af16c2acdfe1ce54) 1121204
checking 'dilate' ............................. PASS (6cf3e21751061042) 2104588
checking 'opening' ............................ PASS (e32b483b92a01e61) 1451050
checking 'closing' ............................ PASS (39b38ac520b6b72d) 1569448
checking 'whiteTopHat' ........................ PASS (2dfa04a48724ec36) 12004.54
checking 'blackTopHat' ........................ PASS (70ff24813042529a) 20296.87
checking 'selfComplementaryTopHat' ............ PASS (4e93f72a43638575) 4469404
checking 'distmap' ............................ PASS (fb1ca8ba680de2b3) 7464344
checking 'watershed' .......................... PASS (29d5027b84535806) 1541186
checking 'floodFill' .......................... PASS (54aa4548fd305300) 2234521
checking 'fillHull' ........................... PASS (8eb52b594f8cd22b) 1541186
checking 'propagate' .......................... PASS (0d73b4f196a75014) 8948876
checking 'toRGB' .............................. PASS (3e30f901f32391f1) 20279146
checking 'rgbImage' ........................... PASS (7265edee83ee6475) 10796552
checking 'colormap' ........................... PASS (2d850cd3a218b6b9) 22585273
checking 'combine' ............................ PASS (8750feb29c15297c) 8992851
checking 'combine' ............................ PASS (c97b83093836307a) 56431472
checking 'tile' ............................... PASS (2144c4a0e85d648a) 72664167
checking 'untile' ............................. PASS (340bd33c3fc91099) 60048605
checking 'abind' .............................. PASS (0fe154b843d8fc58) 9273358
Warning messages:
1: In hash.old(y) : NAs introduced by coercion
2: In hash.old(y) : NAs introduced by coercion
3: In hash.old(y) : NAs introduced by coercion
>
EBImage.Rcheck/EBImage-Ex.timings
| name | user | system | elapsed | |
| EBImage | 3.532 | 0.173 | 10.265 | |
| Image | 0.328 | 0.000 | 0.328 | |
| abind | 0.557 | 0.000 | 0.558 | |
| bwlabel | 0.921 | 0.068 | 0.990 | |
| channel | 0.391 | 0.040 | 0.433 | |
| clahe | 0.169 | 0.016 | 0.185 | |
| colorLabels | 0.153 | 0.012 | 0.165 | |
| colormap | 0.187 | 0.052 | 0.239 | |
| combine | 0.628 | 0.028 | 0.657 | |
| computeFeatures | 0.447 | 0.012 | 0.458 | |
| display-shiny | 0.002 | 0.000 | 0.002 | |
| display | 1.000 | 0.016 | 1.016 | |
| distmap | 0.183 | 0.000 | 0.182 | |
| drawCircle | 0.018 | 0.000 | 0.019 | |
| equalize | 0.917 | 0.028 | 0.946 | |
| fillHull | 0.191 | 0.004 | 0.195 | |
| filter2 | 2.110 | 0.028 | 2.138 | |
| floodFill | 0.380 | 0.008 | 0.389 | |
| gblur | 0.223 | 0.007 | 0.231 | |
| io | 0.584 | 0.064 | 61.754 | |
| localCurvature | 0.544 | 0.012 | 0.555 | |
| medianFilter | 0.800 | 0.136 | 0.936 | |
| morphology | 0.086 | 0.000 | 0.085 | |
| normalize | 0.012 | 0.000 | 0.012 | |
| ocontour | 0.011 | 0.000 | 0.011 | |
| otsu | 0.173 | 0.000 | 0.172 | |
| paintObjects | 1.149 | 0.068 | 1.217 | |
| propagate | 0.966 | 0.004 | 0.970 | |
| rmObjects | 0.056 | 0.004 | 0.060 | |
| spatial | 0.597 | 0.004 | 0.601 | |
| stackObjects | 2.231 | 0.617 | 2.848 | |
| thresh | 0.095 | 0.004 | 0.099 | |
| tile | 0.326 | 0.072 | 0.397 | |
| transpose | 0.196 | 0.032 | 0.228 | |
| watershed | 0.076 | 0.008 | 0.085 | |