Bjoern Schwalb
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/DTA |
| git_branch: RELEASE_3_13 |
| git_last_commit: 31af82a |
| git_last_commit_date: 2021-05-19 11:49:51 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:03 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the DTA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DTA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 538/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DTA 2.38.0 (landing page) Bjoern Schwalb
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: DTA |
| Version: 2.38.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DTA.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings DTA_2.38.0.tar.gz |
| StartedAt: 2021-10-14 22:34:37 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 22:42:17 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 460.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DTA.Rcheck |
| Warnings: 0 |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:DTA.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings DTA_2.38.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/DTA.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'DTA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'DTA' version '2.38.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DTA' can be installed ... OK
* checking installed package size ... NOTE
installed size is 7.5Mb
sub-directories of 1Mb or more:
data 6.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
DTA.dynamic.estimate : ellipse.coordinates: no visible global function
definition for 'qchisq'
DTA.dynamic.estimate : plotsfkt: no visible global function definition
for 'par'
DTA.dynamic.estimate: no visible global function definition for
'quantile'
DTA.dynamic.estimate : plotsfkt: no visible global function definition
for 'points'
DTA.dynamic.estimate : plotsfkt: no visible global function definition
for 'sd'
DTA.dynamic.estimate : plotsfkt: no visible global function definition
for 'legend'
DTA.dynamic.generate: no visible global function definition for 'rf'
DTA.dynamic.generate: no visible global function definition for
'median'
DTA.dynamic.generate : <anonymous>: no visible global function
definition for 'rnorm'
DTA.dynamic.generate: no visible binding for global variable 'median'
DTA.dynamic.singlegenerate : plotsfkt: no visible global function
definition for 'par'
DTA.dynamic.singlegenerate : plotsfkt: no visible global function
definition for 'points'
DTA.dynamic.singlegenerate : plotsfkt: no visible global function
definition for 'abline'
DTA.dynamic.singlegenerate : plotsfkt: no visible global function
definition for 'legend'
DTA.generate: no visible global function definition for 'rf'
DTA.generate: no visible global function definition for 'rnorm'
DTA.map.it: no visible global function definition for 'aggregate'
DTA.map.it : <anonymous>: no visible global function definition for
'median'
DTA.plot.it: no visible global function definition for 'jpeg'
DTA.plot.it: no visible global function definition for 'png'
DTA.plot.it: no visible global function definition for 'bmp'
DTA.plot.it: no visible global function definition for 'tiff'
DTA.plot.it: no visible global function definition for 'postscript'
DTA.plot.it: no visible global function definition for 'pdf'
DTA.plot.it: no visible global function definition for 'dev.off'
DTA.plot.it: no visible global function definition for 'dev.new'
DTA.singleestimate: no visible global function definition for 'median'
DTA.singleestimate : lossfct: no visible global function definition for
'median'
DTA.singleestimate: no visible global function definition for
'optimize'
DTA.singleestimate: no visible global function definition for 'lm'
DTA.singleestimate: no visible global function definition for
'coefficients'
DTA.singleestimate: no visible global function definition for
'quantile'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'par'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'points'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'abline'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'median'
DTA.singleestimate: no visible binding for global variable 'median'
DTA.singleestimate : plotsfkt: no visible binding for global variable
'median'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'hist'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'text'
DTA.singleestimate: no visible global function definition for 'cor'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'layout'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'image'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'colorRampPalette'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'axis'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'box'
DTA.singleestimate: no visible binding for global variable 'sd'
DTA.singleestimate: no visible global function definition for 'loess'
DTA.singleestimate : <anonymous>: no visible global function definition
for 'optimize'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'persp'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'polygon'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'trans3d'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'lines'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'dgamma'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'mtext'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'legend'
DTA.singleestimate : <anonymous>: no visible global function definition
for 'rnorm'
DTA.singleestimate : <anonymous>: no visible global function definition
for 'quantile'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'quantile'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'coefficients'
DTA.singleestimate : plotsfkt: no visible global function definition
for 'density'
DTA.singlegenerate: no visible global function definition for 'median'
DTA.singlegenerate: no visible global function definition for 'rnorm'
gridfkt: no visible global function definition for 'abline'
gridfkt: no visible global function definition for 'text'
likelihood: no visible global function definition for 'dnorm'
likelihood: no visible global function definition for 'dgamma'
medctr: no visible binding for global variable 'median'
medctr: no visible global function definition for 'median'
mediancenter: no visible binding for global variable 'median'
mediancenter: no visible global function definition for 'median'
mtextfkt: no visible global function definition for 'mtext'
parfkt: no visible global function definition for 'par'
pcor: no visible global function definition for 'cor'
scor: no visible global function definition for 'cor'
tls: no visible global function definition for 'model.response'
tls: no visible global function definition for 'model.matrix'
tls: no visible binding for global variable 'contrasts'
toquantiles: no visible global function definition for 'quantile'
wtls.solve: no visible global function definition for 'lm'
wtls.solve: no visible global function definition for 'uniroot'
Undefined global functions or variables:
abline aggregate axis bmp box coefficients colorRampPalette contrasts
cor density dev.new dev.off dgamma dnorm hist image jpeg layout
legend lines lm loess median model.matrix model.response mtext
optimize par pdf persp png points polygon postscript qchisq quantile
rf rnorm sd text tiff trans3d uniroot
Consider adding
importFrom("grDevices", "bmp", "colorRampPalette", "dev.new",
"dev.off", "jpeg", "pdf", "png", "postscript", "tiff",
"trans3d")
importFrom("graphics", "abline", "axis", "box", "hist", "image",
"layout", "legend", "lines", "mtext", "par", "persp",
"points", "polygon", "text")
importFrom("stats", "aggregate", "coefficients", "contrasts", "cor",
"density", "dgamma", "dnorm", "lm", "loess", "median",
"model.matrix", "model.response", "optimize", "qchisq",
"quantile", "rf", "rnorm", "sd", "uniroot")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
DTA.dynamic.generate 54.42 3.66 58.10
DTA.estimate 44.09 0.87 44.99
DTA.generate 43.41 0.67 44.14
DTA.dynamic.estimate 29.72 0.07 29.79
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
DTA.dynamic.generate 56.64 3.91 60.55
DTA.estimate 49.62 1.10 50.73
DTA.generate 46.22 0.91 47.13
DTA.dynamic.estimate 32.05 0.02 32.06
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.13-bioc/meat/DTA.Rcheck/00check.log'
for details.
DTA.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/DTA_2.38.0.tar.gz && rm -rf DTA.buildbin-libdir && mkdir DTA.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DTA.buildbin-libdir DTA_2.38.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL DTA_2.38.0.zip && rm DTA_2.38.0.tar.gz DTA_2.38.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
67 7015k 67 4722k 0 0 6071k 0 0:00:01 --:--:-- 0:00:01 6069k
100 7015k 100 7015k 0 0 6985k 0 0:00:01 0:00:01 --:--:-- 6994k
install for i386
* installing *source* package 'DTA' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'DTA'
finding HTML links ... done
DTA-package html
DTA.dynamic.estimate html
DTA.dynamic.generate html
DTA.estimate html
DTA.generate html
DTA.map.it html
DTA.normalize html
DTA.phenomat html
DTA.plot.it html
Dm.tnumber html
Doelken2008 html
Hs.datamat html
Hs.enst2ensg html
Hs.phenomat html
Hs.reliable html
Hs.tnumber html
Miller2011 html
Miller2011dynamic html
Mm.datamat html
Mm.enst2ensg html
Mm.phenomat html
Mm.reliable html
Mm.tnumber html
Pol.phenomat html
Raw.datamat html
Sc.affy2ensg html
Sc.datamat html
Sc.datamat.dynamic html
Sc.ensg.reliable html
Sc.phenomat html
Sc.phenomat.dynamic html
Sc.reliable html
Sc.reliable.dynamic html
Sc.ribig.ensg html
Sc.rpg.ensg html
Sc.stress.ensg html
Sc.tf.ensg html
Sc.tnumber html
Sp.affy.reliable html
Sp.tnumber html
Sun2011 html
Wt.phenomat html
tls html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'DTA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DTA' as DTA_2.38.0.zip
* DONE (DTA)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'DTA' successfully unpacked and MD5 sums checked
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DTA.Rcheck/examples_i386/DTA-Ex.timings
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DTA.Rcheck/examples_x64/DTA-Ex.timings
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