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This page was generated on 2021-10-15 15:06:02 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the DESeq2 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DESeq2.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 485/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DESeq2 1.32.0 (landing page) Michael Love
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: DESeq2 |
Version: 1.32.0 |
Command: rm -rf DESeq2.buildbin-libdir && mkdir DESeq2.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DESeq2.buildbin-libdir DESeq2_1.32.0.tar.gz |
StartedAt: 2021-10-15 08:57:10 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 08:58:44 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 93.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: DESeq2_1.32.0.zip |
PackageFileSize: 2.791 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf DESeq2.buildbin-libdir && mkdir DESeq2.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DESeq2.buildbin-libdir DESeq2_1.32.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'DESeq2' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c DESeq2.cpp -o DESeq2.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o DESeq2.dll tmp.def DESeq2.o RcppExports.o -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/DESeq2.buildbin-libdir/00LOCK-DESeq2/00new/DESeq2/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'DESeq2' finding HTML links ... done DESeq html finding level-2 HTML links ... done DESeq2-package html DESeqDataSet html DESeqResults html DESeqTransform html coef html collapseReplicates html counts html design html dispersionFunction html dispersions html estimateBetaPriorVar html estimateDispersions html estimateDispersionsGeneEst html estimateSizeFactors html estimateSizeFactorsForMatrix html fpkm html fpm html integrateWithSingleCell html lfcShrink html makeExampleDESeqDataSet html nbinomLRT html nbinomWaldTest html normTransform html normalizationFactors html normalizeGeneLength html plotCounts html plotDispEsts html plotMA html plotPCA html plotSparsity html priorInfo html replaceOutliers html results html rlog html show html sizeFactors html summary html unmix html varianceStabilizingTransformation html vst html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'DESeq2' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c DESeq2.cpp -o DESeq2.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o DESeq2.dll tmp.def DESeq2.o RcppExports.o -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/DESeq2.buildbin-libdir/DESeq2/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'DESeq2' as DESeq2_1.32.0.zip * DONE (DESeq2)