| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:01 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the CoreGx package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoreGx.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 393/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CoreGx 1.4.2 (landing page) Benjamin Haibe-Kains
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: CoreGx |
| Version: 1.4.2 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CoreGx_1.4.2.tar.gz && rm -rf CoreGx.buildbin-libdir && mkdir CoreGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoreGx.buildbin-libdir CoreGx_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CoreGx_1.4.2.zip && rm CoreGx_1.4.2.tar.gz CoreGx_1.4.2.zip |
| StartedAt: 2021-10-14 09:31:24 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:33:02 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 97.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CoreGx_1.4.2.tar.gz && rm -rf CoreGx.buildbin-libdir && mkdir CoreGx.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoreGx.buildbin-libdir CoreGx_1.4.2.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CoreGx_1.4.2.zip && rm CoreGx_1.4.2.tar.gz CoreGx_1.4.2.zip
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install for i386
* installing *source* package 'CoreGx' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
Registered S3 method overwritten by 'ggplot2':
method from
print.element sets
Creating a generic function for 'colnames' from package 'base' in package 'CoreGx'
Creating a generic function for 'rownames' from package 'base' in package 'CoreGx'
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CoreGx'
finding HTML links ... done
CoreSet-accessors html
CoreSet-class html
CoreSet html
Create html
DataMapper-accessors html
DataMapper-class html
LongTable-class html
LongTable html
LongTableDataMapper-accessors html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/CoreGx.buildbin-libdir/00LOCK-CoreGx/00new/CoreGx/help/assayMap+2CLongTableDataMapper+2CList-method.html
LongTableDataMapper-class html
LongTableDataMapper html
amcc html
as html
as.data.frame.LongTable html
as.data.table.LongTable html
as.long.table html
assayCols html
buildLongTable html
callingWaterfall html
cash-LongTable-method html
cash-set-LongTable-method html
checkColumnCardinality html
checkCsetStructure html
clevelandSmall_cSet html
colIDs html
colMeta html
connectivityScore html
cosinePerm html
dot- html
dot-convertCSetMolecularProfilesToSE html
dot-distancePointLine html
dot-distancePointSegment html
dot-intersectList html
dot-sensitivityToLongTable html
dot-symSetDiffList html
dot-unionList html
drugSensitivitySig html
exampleDataMapper html
getIntern html
guessMapping-LongTableDataMapper-method
html
guessMapping html
gwc html
idCols-LongTable-method html
idCols html
is.items html
lapply-MultiAssayExperiment-method html
list_or_LongTable-class html
mcc html
merckLongTable html
metaConstruct html
metadata-LongTable-method html
metadata-set-LongTable-method html
reindex-LongTable-method html
reindex html
rowIDs html
rowMeta html
sensitivityInfo-set html
sensitivityInfo html
sensitivityMeasures-set html
sensitivityMeasures html
sensitivityProfiles-set html
sensitivityProfiles html
sensitivityRaw-set html
sensitivityRaw html
sensitivitySlotToLongTable html
show-CoreSet-method html
show-LongTable-method html
showSigAnnot html
sub-LongTable-ANY-ANY-ANY-method html
sub-subset-LongTable-ANY-ANY-method html
subset-LongTable-method html
subsetTo html
summarizeMolecularProfiles html
summarizeSensitivityProfiles html
updateCellId html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CoreGx' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CoreGx' as CoreGx_1.4.2.zip
* DONE (CoreGx)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'CoreGx' successfully unpacked and MD5 sums checked