Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:01 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the CoCiteStats package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoCiteStats.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 355/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CoCiteStats 1.64.0 (landing page) Bioconductor Package Maintainer
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: CoCiteStats |
Version: 1.64.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CoCiteStats.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings CoCiteStats_1.64.0.tar.gz |
StartedAt: 2021-10-14 21:21:48 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 21:27:49 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 360.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CoCiteStats.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CoCiteStats.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings CoCiteStats_1.64.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/CoCiteStats.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'CoCiteStats/DESCRIPTION' ... OK * this is package 'CoCiteStats' version '1.64.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'CoCiteStats' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Title field: should not end in a period. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: 'org.Hs.eg.db' These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE gene.geneslist.sig: no visible global function definition for 'Lkeys' gene.geneslist.sig: no visible binding for global variable 'org.Hs.egPMID' paperLen: no visible global function definition for 'toTable' paperLen: no visible binding for global variable 'org.Hs.egPMID' paperLen: no visible global function definition for 'nhit' paperLen: no visible global function definition for 'revmap' Undefined global functions or variables: Lkeys nhit org.Hs.egPMID revmap toTable * checking Rd files ... NOTE prepare_Rd: gene.geneslist.statistic.Rd:19-21: Dropping empty section \details * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed actorAdjTable 21.19 6.89 28.58 gene.geneslist.sig 22.15 0.38 22.53 gene.geneslist.statistic 15.35 0.03 15.38 gene.gene.statistic 14.68 0.39 15.06 twTStats 14.79 0.04 14.81 twowayTable 14.06 0.04 14.11 paperLen 11.93 0.07 12.01 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed actorAdjTable 20.75 5.39 26.14 gene.geneslist.sig 20.21 0.28 20.50 gene.geneslist.statistic 13.22 0.13 13.35 gene.gene.statistic 12.91 0.14 13.05 twowayTable 12.76 0.11 12.87 twTStats 12.64 0.05 12.69 paperLen 12.63 0.04 12.67 * checking PDF version of manual ... OK * DONE Status: 4 NOTEs See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/CoCiteStats.Rcheck/00check.log' for details.
CoCiteStats.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CoCiteStats_1.64.0.tar.gz && rm -rf CoCiteStats.buildbin-libdir && mkdir CoCiteStats.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CoCiteStats.buildbin-libdir CoCiteStats_1.64.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CoCiteStats_1.64.0.zip && rm CoCiteStats_1.64.0.tar.gz CoCiteStats_1.64.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 5348 100 5348 0 0 65708 0 --:--:-- --:--:-- --:--:-- 66850 install for i386 * installing *source* package 'CoCiteStats' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CoCiteStats' finding HTML links ... done actorAdjTable html gene.gene.statistic html gene.geneslist.sig html gene.geneslist.statistic html paperLen html twTStats html twowayTable html ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CoCiteStats' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CoCiteStats' as CoCiteStats_1.64.0.zip * DONE (CoCiteStats) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'CoCiteStats' successfully unpacked and MD5 sums checked
CoCiteStats.Rcheck/examples_i386/CoCiteStats-Ex.timings
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CoCiteStats.Rcheck/examples_x64/CoCiteStats-Ex.timings
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