Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:37 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the CiteFuse package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CiteFuse.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 316/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CiteFuse 1.4.0 (landing page) Yingxin Lin
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: CiteFuse |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:CiteFuse.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings CiteFuse_1.4.0.tar.gz |
StartedAt: 2021-10-14 09:15:57 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 09:20:12 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 255.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CiteFuse.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:CiteFuse.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings CiteFuse_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/CiteFuse.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CiteFuse/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CiteFuse’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CiteFuse’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
CiteFuse.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL CiteFuse ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘CiteFuse’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CiteFuse)
CiteFuse.Rcheck/CiteFuse-Ex.timings
name | user | system | elapsed | |
CiteFuse | 2.233 | 0.076 | 2.309 | |
DEbubblePlot | 3.843 | 0.048 | 3.891 | |
DEcomparisonPlot | 2.657 | 0.112 | 2.769 | |
DEgenes | 1.451 | 0.008 | 1.459 | |
DEgenesCross | 4.675 | 0.048 | 4.724 | |
crossSampleDoublets | 2.018 | 0.032 | 2.049 | |
geneADTnetwork | 1.772 | 0.020 | 1.792 | |
igraphClustering | 0.981 | 0.020 | 1.001 | |
importanceADT | 1.632 | 0.028 | 1.660 | |
ligandReceptorTest | 2.637 | 0.036 | 2.673 | |
normaliseExprs | 1.136 | 0.012 | 1.148 | |
plotHTO | 4.016 | 0.044 | 4.061 | |
preprocessing | 0.774 | 0.020 | 0.794 | |
readFrom10X | 0.000 | 0.000 | 0.001 | |
reducedDimSNF | 1.276 | 0.012 | 1.287 | |
selectDEgenes | 1.480 | 0.012 | 1.492 | |
spectralClustering | 1.752 | 0.016 | 1.768 | |
visImportance | 2.333 | 0.068 | 2.401 | |
visLigandReceptor | 2.297 | 0.132 | 2.429 | |
visualiseDim | 1.767 | 0.088 | 1.856 | |
visualiseExprs | 2.512 | 0.408 | 2.920 | |
visualiseExprsList | 1.684 | 0.120 | 1.805 | |
visualiseKNN | 0.845 | 0.068 | 0.913 | |
withinSampleDoublets | 1.843 | 0.020 | 1.863 | |