Pacome Prompsy
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/ChromSCape |
| git_branch: RELEASE_3_13 |
| git_last_commit: 752d173 |
| git_last_commit_date: 2021-09-14 04:58:21 -0400 (Tue, 14 Sep 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:00 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the ChromSCape package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChromSCape.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 306/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ChromSCape 1.2.62 (landing page) Pacome Prompsy
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: ChromSCape |
| Version: 1.2.62 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ChromSCape_1.2.62.tar.gz && rm -rf ChromSCape.buildbin-libdir && mkdir ChromSCape.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChromSCape.buildbin-libdir ChromSCape_1.2.62.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ChromSCape_1.2.62.zip && rm ChromSCape_1.2.62.tar.gz ChromSCape_1.2.62.zip |
| StartedAt: 2021-10-14 10:11:23 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:14:13 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 170.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ChromSCape_1.2.62.tar.gz && rm -rf ChromSCape.buildbin-libdir && mkdir ChromSCape.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChromSCape.buildbin-libdir ChromSCape_1.2.62.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ChromSCape_1.2.62.zip && rm ChromSCape_1.2.62.tar.gz ChromSCape_1.2.62.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 3339k 0 3837 0 0 46893 0 0:01:12 --:--:-- 0:01:12 46792
68 3339k 68 2280k 0 0 2116k 0 0:00:01 0:00:01 --:--:-- 2115k
100 3339k 100 3339k 0 0 2299k 0 0:00:01 0:00:01 --:--:-- 2298k
install for i386
* installing *source* package 'ChromSCape' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"c:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c as_dist.cpp -o as_dist.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ChromSCape.dll tmp.def RcppExports.o as_dist.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/ChromSCape.buildbin-libdir/00LOCK-ChromSCape/00new/ChromSCape/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ChromSCape'
finding HTML links ... done
CompareWilcox html
CompareedgeRGLM html
DA_custom html
DA_one_vs_rest_fun html
DA_pairwise html
H1proportion html
annotToCol2 html
annotation_from_merged_peaks html
anocol_binary html
anocol_categorical html
bams_to_matrix_indexes html
beds_to_matrix_indexes html
calculate_CNA html
calculate_cyto_mat html
calculate_gain_or_loss html
calculate_logRatio_CNA html
call_macs2_merge_peaks html
changeRange html
check_correct_datamatrix html
choose_cluster_scExp html
choose_perplexity html
col2hex html
colors_scExp html
combine_datamatrix html
combine_enrichmentTests html
concatenate_scBed_into_clusters html
consensus_clustering_scExp html
correlation_and_hierarchical_clust_scExp
html
count_coverage html
create_project_folder html
create_sample_name_mat html
create_scDataset_raw html
create_scExp html
define_feature html
detect_samples html
differential_analysis_scExp html
distPearson html
enrichmentTest html
exclude_features_scExp html
feature_annotation_scExp html
filter_correlated_cell_scExp html
filter_genes_with_refined_peak_annotation
html
filter_scExp html
find_top_features html
gene_set_enrichment_analysis_scExp html
generate_analysis html
generate_count_matrix html
generate_coverage_tracks html
generate_feature_names html
getExperimentNames html
getMainExperiment html
get_color_dataframe_from_input html
get_cyto_features html
get_genomic_coordinates html
get_most_variable_cyto html
gg_fill_hue html
groupMat html
has_genomic_coordinates html
hclustAnnotHeatmapPlot html
hg38.GeneTSS html
hg38.chromosomes html
hg38.cytoBand html
imageCol html
import_count_input_files html
import_scExp html
index_peaks_barcodes_to_matrix_indexes
html
inter_correlation_scExp html
intra_correlation_scExp html
launchApp html
load_MSIGdb html
merge_MACS2_peaks html
mm10.GeneTSS html
mm10.chromosomes html
mm10.cytoBand html
normalize_scExp html
num_cell_after_QC_filt_scExp html
num_cell_after_cor_filt_scExp html
num_cell_before_cor_filt_scExp html
num_cell_in_cluster_scExp html
num_cell_scExp html
pca_irlba_for_sparseMatrix html
peaks_to_bins html
plot_cluster_consensus_scExp html
plot_coverage_BigWig html
plot_differential_H1_scExp html
plot_differential_summary_scExp html
plot_differential_volcano_scExp html
plot_distribution_scExp html
plot_gain_or_loss_barplots html
plot_heatmap_scExp html
plot_inter_correlation_scExp html
plot_intra_correlation_scExp html
plot_most_contributing_features html
plot_pie_most_contributing_chr html
plot_reduced_dim_scExp html
plot_reduced_dim_scExp_CNA html
preprocess_CPM html
preprocess_RPKM html
preprocess_TFIDF html
preprocess_TPM html
preprocess_feature_size_only html
raw_counts_to_sparse_matrix html
rawfile_ToBigWig html
read_count_mat_with_separated_chr_start_end
html
read_sparse_matrix html
reduce_dim_batch_correction html
reduce_dims_scExp html
remove_chr_M_fun html
remove_non_canonical_fun html
results_enrichmentTest html
retrieve_top_bot_features_pca html
run_pairwise_tests html
run_tsne_scExp html
scExp html
separate_BAM_into_clusters html
separator_count_mat html
smoothBin html
subsample_scExp html
subset_bam_call_peaks html
swapAltExp_sameColData html
table_enriched_genes_scExp html
warning_DA html
warning_filter_correlated_cell_scExp html
warning_plot_reduced_dim_scExp html
warning_raw_counts_to_sparse_matrix html
wrapper_Signac_FeatureMatrix html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ChromSCape' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c as_dist.cpp -o as_dist.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ChromSCape.dll tmp.def RcppExports.o as_dist.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/ChromSCape.buildbin-libdir/ChromSCape/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChromSCape' as ChromSCape_1.2.62.zip
* DONE (ChromSCape)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'ChromSCape' successfully unpacked and MD5 sums checked