##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf ChemmineOB.buildbin-libdir && mkdir ChemmineOB.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ChemmineOB.buildbin-libdir ChemmineOB_1.30.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'ChemmineOB' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"  -IC:/openbabel3/src/i386/include -IC:/openbabel3/deps/eigin-3.3.7  -DHAVE_EIGEN -DHAVE_ISFINITE -Wno-misleading-indentation -fPIC   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp: In function 'void _p_f_enum_std__ios_base__event_r_std__ios_base_int__void(std::ios_base::event, std::ios_base&, int)':
ChemmineOB.cpp:4160:7: warning: unused variable 'ecode' [-Wunused-variable]
   int ecode = 0; arg1 = (std::ios_base::event) swigarg_arg1; arg2 = (std::ios_base *) &swigarg_arg2; arg3 = (int) swigarg_arg3;
       ^~~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"c:/extsoft/include"  -IC:/openbabel3/src/i386/include -IC:/openbabel3/deps/eigin-3.3.7  -DHAVE_EIGEN -DHAVE_ISFINITE -Wno-misleading-indentation -fPIC   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c canonical.cpp -o canonical.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ChemmineOB.dll tmp.def ChemmineOB.o canonical.o -LC:/openbabel3/bin/i386/bin -lopenbabel -LC:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/ChemmineOB.buildbin-libdir/00LOCK-ChemmineOB/00new/ChemmineOB/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'copyToR' with signature '"_p_std::char_traits<(char)>"': no definition for class "_p_std::char_traits<(char)>"
in method for 'copyToR' with signature '"_p_std::pair<(unsigned int,unsigned int)>"': no definition for class "_p_std::pair<(unsigned int,unsigned int)>"
in method for 'copyToR' with signature '"_p_OpenBabel::CharPtrLess"': no definition for class "_p_OpenBabel::CharPtrLess"
in method for 'copyToR' with signature '"_p_OpenBabel::FptIndexHeader"': no definition for class "_p_OpenBabel::FptIndexHeader"
in method for 'copyToR' with signature '"_p_OpenBabel::OBStereo"': no definition for class "_p_OpenBabel::OBStereo"
in method for 'copyToR' with signature '"_p_OpenBabel::OBStereoUnit"': no definition for class "_p_OpenBabel::OBStereoUnit"
in method for 'copyToR' with signature '"_p_OpenBabel::LineSearchType"': no definition for class "_p_OpenBabel::LineSearchType"
in method for 'copyToR' with signature '"_p_OpenBabel::OBTetrahedralConfig"': no definition for class "_p_OpenBabel::OBTetrahedralConfig"
in method for 'copyToR' with signature '"_p_OpenBabel::OBCisTransConfig"': no definition for class "_p_OpenBabel::OBCisTransConfig"
in method for 'copyToR' with signature '"_p_OpenBabel::OBSquarePlanarConfig"': no definition for class "_p_OpenBabel::OBSquarePlanarConfig"
** help
*** installing help indices
  converting help for package 'ChemmineOB'
    finding HTML links ... done
    OB-classes                              html  
REDIRECT:topic	 $,_p_std__vectorT_std__vectorT_OpenBabel__vector3_std__allocatorT_OpenBabel__vector3_t_t_std__allocatorT_std__vectorT_OpenBabel__vector3_std__allocatorT_OpenBabel__vector3_t_t_t_t-method -> OB-classes.html [ FAIL ]
REDIRECT:topic	 $,_p_std__vectorT_std__vectorT_std__pairT_unsigned_int_unsigned_int_t_std__allocatorT_std__pairT_unsigned_int_unsigned_int_t_t_t_std__allocatorT_std__vectorT_std__pairT_unsigned_int_unsigned_int_t_std__allocatorT_std__pairT_unsigned_int_unsigned_int_t_t_t_t_t-method -> OB-classes.html [ FAIL ]
    canonicalNumbering_OB                   html  
    convertFormat                           html  
    convertFormatFile                       html  
    convertToImage                          html  
    exactMass_OB                            html  
    fingerprint_OB                          html  
    forEachMol                              html  
    prop_OB                                 html  
    smartsSearch_OB                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in fun(libname, pkgname) :
  ChemmineOB is not fully supported on this platform. windows i386
** testing if installed package can be loaded from final location
Warning in fun(libname, pkgname) :
  ChemmineOB is not fully supported on this platform. windows i386
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'ChemmineOB' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"  -IC:/openbabel3/src/x64/include -IC:/openbabel3/deps/eigin-3.3.7  -DHAVE_EIGEN -DHAVE_ISFINITE -Wno-misleading-indentation -fPIC   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c ChemmineOB.cpp -o ChemmineOB.o
ChemmineOB.cpp: In function 'void _p_f_enum_std__ios_base__event_r_std__ios_base_int__void(std::ios_base::event, std::ios_base&, int)':
ChemmineOB.cpp:4160:7: warning: unused variable 'ecode' [-Wunused-variable]
   int ecode = 0; arg1 = (std::ios_base::event) swigarg_arg1; arg2 = (std::ios_base *) &swigarg_arg2; arg3 = (int) swigarg_arg3;
       ^~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"  -IC:/openbabel3/src/x64/include -IC:/openbabel3/deps/eigin-3.3.7  -DHAVE_EIGEN -DHAVE_ISFINITE -Wno-misleading-indentation -fPIC   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c canonical.cpp -o canonical.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ChemmineOB.dll tmp.def ChemmineOB.o canonical.o -LC:/openbabel3/bin/x64/bin -lopenbabel -LC:/Users/biocbuild/bbs-3.13-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/ChemmineOB.buildbin-libdir/ChemmineOB/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ChemmineOB' as ChemmineOB_1.30.0.zip
* DONE (ChemmineOB)