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This page was generated on 2021-10-15 15:06:30 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the CellNOptR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellNOptR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 266/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CellNOptR 1.38.0 (landing page) A.Gabor
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: CellNOptR |
Version: 1.38.0 |
Command: rm -rf CellNOptR.buildbin-libdir && mkdir CellNOptR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CellNOptR_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CellNOptR.buildbin-libdir |
StartedAt: 2021-10-15 01:52:29 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 01:53:33 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 64.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: CellNOptR_1.38.0.tgz |
PackageFileSize: 2.084 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CellNOptR.buildbin-libdir && mkdir CellNOptR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CellNOptR_1.38.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CellNOptR.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CellNOptR.buildbin-libdir CellNOptR_1.38.0.tar.gz' >>>>>>> * installing *source* package ‘CellNOptR’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c getFit.c -o getFit.o getFit.c:42:6: warning: unused variable 'selCounter' [-Wunused-variable] int selCounter = 0; ^ getFit.c:41:6: warning: unused variable 'selection' [-Wunused-variable] int selection[40]; ^ getFit.c:40:6: warning: unused variable 'or_max' [-Wunused-variable] int or_max = 0; ^ getFit.c:39:6: warning: unused variable 'curr_max' [-Wunused-variable] int curr_max = 0; ^ getFit.c:47:6: warning: unused variable 'nReacs' [-Wunused-variable] int nReacs = INTEGER(nReacs_in)[0]; ^ 5 warnings generated. clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c simulatorT1.c -o simulatorT1.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c simulatorTN.c -o simulatorTN.o simulatorTN.c:303:24: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if((track_cond == nCond)) { ~~~~~~~~~~~^~~~~~~~ simulatorTN.c:303:24: note: remove extraneous parentheses around the comparison to silence this warning if((track_cond == nCond)) { ~ ^ ~ simulatorTN.c:303:24: note: use '=' to turn this equality comparison into an assignment if((track_cond == nCond)) { ^~ = simulatorTN.c:501:28: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if((track_cond == nCond)) { ~~~~~~~~~~~^~~~~~~~ simulatorTN.c:501:28: note: remove extraneous parentheses around the comparison to silence this warning if((track_cond == nCond)) { ~ ^ ~ simulatorTN.c:501:28: note: use '=' to turn this equality comparison into an assignment if((track_cond == nCond)) { ^~ = 2 warnings generated. clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CellNOptR.so getFit.o simulatorT1.o simulatorTN.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.13-bioc/meat/CellNOptR.buildbin-libdir/00LOCK-CellNOptR/00new/CellNOptR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CellNOptR) >>>>>>> >>>>>>> FIXING LINKS FOR CellNOptR.buildbin-libdir/CellNOptR/libs/CellNOptR.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs/CellNOptR.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs/CellNOptR.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs/CellNOptR.so"