Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:37 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the CeTF package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CeTF.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 274/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CeTF 1.4.5 (landing page) Carlos Alberto Oliveira de Biagi Junior
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: CeTF |
Version: 1.4.5 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:CeTF.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings CeTF_1.4.5.tar.gz |
StartedAt: 2021-10-14 09:12:20 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 09:16:48 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 267.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CeTF.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:CeTF.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings CeTF_1.4.5.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/CeTF.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CeTF/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CeTF’ version ‘1.4.5’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CeTF’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘methods’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.13-bioc/meat/CeTF.Rcheck/00check.log’ for details.
CeTF.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL CeTF ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘CeTF’ ... ** using staged installation ** libs g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -c PCIT.cpp -o PCIT.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.13-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.13-bioc/R/lib -L/usr/local/lib -o CeTF.so PCIT.o RcppExports.o -L/home/biocbuild/bbs-3.13-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.13-bioc/R/library/00LOCK-CeTF/00new/CeTF/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CeTF)
CeTF.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("CeTF") ======================================== CeTF version 1.4.5 Bioconductor page: http://bioconductor.org/packages/CeTF/ Github page: https://github.com/cbiagii/CeTF or https://cbiagii.github.io/CeTF/ Documentation: http://bioconductor.org/packages/CeTF/ If you use it in published research, please cite: Carlos Alberto Oliveira de Biagi Junior, Ricardo Perecin Nociti, Breno Osvaldo Funicheli, Patricia de Cassia Ruy, Joao Paulo Bianchi Ximenez, Wilson A Silva Jr. CeTF: an R package to Coexpression for Transcription Factors using Regulatory Impact Factors (RIF) and Partial Correlation and Information (PCIT) analysis. bioRxiv. 2020, DOI: 10.1101/2020.03.30.015784 ======================================== > test_check("CeTF") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 43 ] > > proc.time() user system elapsed 14.766 1.097 16.306
CeTF.Rcheck/CeTF-Ex.timings
name | user | system | elapsed | |
CeTFdemo | 0.002 | 0.000 | 0.002 | |
CircosTargets | 0 | 0 | 0 | |
InputData-methods | 0.015 | 0.004 | 0.019 | |
NetworkData-methods | 0.018 | 0.008 | 0.026 | |
OutputData-methods | 0.029 | 0.032 | 0.062 | |
PCIT | 0.017 | 0.000 | 0.016 | |
RIF | 0.005 | 0.000 | 0.005 | |
RIFPlot | 0.406 | 0.016 | 0.422 | |
RIF_input | 0.001 | 0.000 | 0.001 | |
SmearPlot | 1.164 | 0.032 | 1.198 | |
TFs | 0.001 | 0.000 | 0.000 | |
bivar.awk | 0.001 | 0.001 | 0.001 | |
clustCoef | 0.023 | 0.003 | 0.026 | |
clustCoefPercentage | 0.020 | 0.004 | 0.024 | |
densityPlot | 1.176 | 0.064 | 1.239 | |
diffusion | 0.001 | 0.000 | 0.000 | |
enrichPlot | 0.557 | 0.008 | 0.565 | |
enrichdemo | 0.001 | 0.000 | 0.001 | |
expDiff | 0.249 | 0.040 | 0.289 | |
getDE-methods | 0.011 | 0.008 | 0.019 | |
getData-methods | 0.033 | 0.000 | 0.033 | |
getEnrich | 0 | 0 | 0 | |
getGroupGO | 0.001 | 0.000 | 0.001 | |
heatPlot | 0.831 | 0.004 | 0.835 | |
histPlot | 0.254 | 0.004 | 0.258 | |
netConditionsPlot | 1.816 | 0.040 | 1.856 | |
netGOTFPlot | 0.000 | 0.001 | 0.001 | |
normExp | 0.076 | 0.034 | 0.111 | |
pcitC | 0.022 | 0.000 | 0.022 | |
refGenes | 0.001 | 0.000 | 0.001 | |
runAnalysis | 0.335 | 0.004 | 0.338 | |
simCounts | 0.000 | 0.001 | 0.002 | |
simNorm | 0.000 | 0.001 | 0.001 | |
tolerance | 0.000 | 0.000 | 0.001 | |