Back to Multiple platform build/check report for BioC 3.13
AB[C]DEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2021-10-15 15:06:30 -0400 (Fri, 15 Oct 2021).

BUILD results for CancerMutationAnalysis on machv2

To the developers/maintainers of the CancerMutationAnalysis package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CancerMutationAnalysis.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 237/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CancerMutationAnalysis 1.34.0  (landing page)
Simina M. Boca
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/CancerMutationAnalysis
git_branch: RELEASE_3_13
git_last_commit: c101998
git_last_commit_date: 2021-05-19 11:52:03 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: CancerMutationAnalysis
Version: 1.34.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CancerMutationAnalysis
StartedAt: 2021-10-14 11:02:19 -0400 (Thu, 14 Oct 2021)
EndedAt: 2021-10-14 11:03:36 -0400 (Thu, 14 Oct 2021)
EllapsedTime: 77.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CancerMutationAnalysis
###
##############################################################################
##############################################################################


* checking for file ‘CancerMutationAnalysis/DESCRIPTION’ ... OK
* preparing ‘CancerMutationAnalysis’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CancerMutationAnalysis.Rnw’ using Sweave
Loading required package: qvalue
Warning: Package 'CancerMutationAnalysis' is deprecated and will be removed from
  Bioconductor version 3.14

Error: processing vignette 'CancerMutationAnalysis.Rnw' failed with diagnostics:
 chunk 8 (label = loadKEGGsets) 
Error in library(KEGG.db) : there is no package called ‘KEGG.db’

--- failed re-building ‘CancerMutationAnalysis.Rnw’

SUMMARY: processing the following file failed:
  ‘CancerMutationAnalysis.Rnw’

Error: Vignette re-building failed.
Execution halted