Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:38 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the CTDquerier package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CTDquerier.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 420/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CTDquerier 2.0.0 (landing page) Xavier Escribà-Montagut
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | TIMEOUT | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: CTDquerier |
Version: 2.0.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:CTDquerier.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings CTDquerier_2.0.0.tar.gz |
StartedAt: 2021-10-14 09:26:26 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 10:06:26 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 2400.1 seconds |
RetCode: None |
Status: TIMEOUT |
CheckDir: CTDquerier.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:CTDquerier.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings CTDquerier_2.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/CTDquerier.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘CTDquerier/DESCRIPTION’ ... OK * this is package ‘CTDquerier’ version ‘2.0.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CTDquerier’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 176 marked UTF-8 strings * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... WARNING Files in the 'vignettes' directory but no files in 'inst/doc': ‘batch_query.Rmd’, ‘biomed-central.csl’, ‘case_study.Rmd’, ‘case_study.bib’, ‘img/01_CTDbase.png’, ‘img/02_XKR4_keyword.png’, ‘img/03_BatchQuery.png’, ‘vignette.Rmd’ * checking examples ...
CTDquerier.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL CTDquerier ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘CTDquerier’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CTDquerier)
CTDquerier.Rcheck/CTDquerier-Ex.timings
name | user | system | elapsed | |
download_ctd_chem | 1.323 | 0.067 | 1.391 | |
download_ctd_dise | 0.229 | 0.000 | 0.229 | |
download_ctd_genes | 0.252 | 0.000 | 0.252 | |
enrich-methods | 10.370 | 0.192 | 610.512 | |
gala | 2.481 | 0.060 | 2.541 | |
get_table-methods | 2.10 | 0.02 | 2.12 | |
get_terms-methods | 2.152 | 0.047 | 2.199 | |
leaf_plot | 0.442 | 0.076 | 0.518 | |
load_ctd_chem | 3.228 | 0.040 | 3.269 | |
load_ctd_dise | 1.490 | 0.032 | 1.521 | |
load_ctd_gene | 12.692 | 0.316 | 13.010 | |
query_ctd_chem | 6.269 | 0.141 | 1205.891 | |
query_ctd_dise | 1.983 | 0.221 | 452.431 | |