T. Cokelaer
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/CNORfuzzy |
| git_branch: RELEASE_3_13 |
| git_last_commit: 0e3dc04 |
| git_last_commit_date: 2021-05-19 11:53:34 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:32 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the CNORfuzzy package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CNORfuzzy.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 345/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CNORfuzzy 1.34.0 (landing page) T. Cokelaer
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: CNORfuzzy |
| Version: 1.34.0 |
| Command: rm -rf CNORfuzzy.buildbin-libdir && mkdir CNORfuzzy.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNORfuzzy_1.34.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNORfuzzy.buildbin-libdir |
| StartedAt: 2021-10-15 01:59:17 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 02:00:27 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 70.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: CNORfuzzy_1.34.0.tgz |
| PackageFileSize: 680.8 KiB |
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### Running command:
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### rm -rf CNORfuzzy.buildbin-libdir && mkdir CNORfuzzy.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNORfuzzy_1.34.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNORfuzzy.buildbin-libdir
###
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNORfuzzy.buildbin-libdir CNORfuzzy_1.34.0.tar.gz'
>>>>>>>
* installing *source* package ‘CNORfuzzy’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c simulatorT1.c -o simulatorT1.o
simulatorT1.c:320:28: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
if((track_cond == nCond)) {
~~~~~~~~~~~^~~~~~~~
simulatorT1.c:320:28: note: remove extraneous parentheses around the comparison to silence this warning
if((track_cond == nCond)) {
~ ^ ~
simulatorT1.c:320:28: note: use '=' to turn this equality comparison into an assignment
if((track_cond == nCond)) {
^~
=
1 warning generated.
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNORfuzzy.so simulatorT1.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/CNORfuzzy.buildbin-libdir/00LOCK-CNORfuzzy/00new/CNORfuzzy/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CNORfuzzy)
>>>>>>>
>>>>>>> FIXING LINKS FOR CNORfuzzy.buildbin-libdir/CNORfuzzy/libs/CNORfuzzy.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "CNORfuzzy.buildbin-libdir/CNORfuzzy/libs/CNORfuzzy.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "CNORfuzzy.buildbin-libdir/CNORfuzzy/libs/CNORfuzzy.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "CNORfuzzy.buildbin-libdir/CNORfuzzy/libs/CNORfuzzy.so"