| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:00 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the CFAssay package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CFAssay.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 276/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CFAssay 1.26.0 (landing page) Herbert Braselmann
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: CFAssay |
| Version: 1.26.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CFAssay.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings CFAssay_1.26.0.tar.gz |
| StartedAt: 2021-10-14 20:53:58 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 20:54:30 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 32.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: CFAssay.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:CFAssay.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings CFAssay_1.26.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/CFAssay.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CFAssay/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CFAssay' version '1.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CFAssay' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
plotExp.default
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
cellsurvLQdiff : fitLQ.MLdiff: no visible global function definition
for 'glm'
cellsurvLQdiff : fitLQ.MLdiff: no visible global function definition
for 'quasipoisson'
cellsurvLQdiff : fitLQ.MLdiff: no visible global function definition
for 'anova'
cellsurvLQdiff : fitLQ.LSdiff: no visible global function definition
for 'lm'
cellsurvLQdiff : fitLQ.LSdiff: no visible global function definition
for 'anova'
cellsurvLQdiff : fitLQ1.MLdiff: no visible global function definition
for 'glm'
cellsurvLQdiff : fitLQ1.MLdiff: no visible global function definition
for 'quasipoisson'
cellsurvLQdiff : fitLQ1.MLdiff: no visible global function definition
for 'anova'
cellsurvLQdiff : fitLQ1.LSdiff: no visible global function definition
for 'lm'
cellsurvLQdiff : fitLQ1.LSdiff: no visible global function definition
for 'anova'
cellsurvLQdiff : fitLQ1.LSdiffFr: no visible global function definition
for 'lm'
cellsurvLQdiff : fitLQ1.LSdiffFr: no visible global function definition
for 'anova'
cellsurvLQfit : fitLQ.ML: no visible global function definition for
'glm'
cellsurvLQfit : fitLQ.ML: no visible global function definition for
'quasipoisson'
cellsurvLQfit : fitLQ.LS: no visible global function definition for
'lm'
cellsurvLQfit : fitLQ1.ML: no visible global function definition for
'glm'
cellsurvLQfit : fitLQ1.ML: no visible global function definition for
'quasipoisson'
cellsurvLQfit : fitLQ1.LS: no visible global function definition for
'lm'
cellsurvLQfit : fitLQ1.LSfr: no visible global function definition for
'lm'
cfa2way: no visible global function definition for 'formula'
cfa2way: no visible global function definition for 'glm'
cfa2way: no visible global function definition for 'quasipoisson'
cfa2way: no visible global function definition for 'anova'
cfa2way: no visible global function definition for 'lm'
pes : <anonymous>: no visible global function definition for 'glm'
pes : <anonymous>: no visible global function definition for
'quasipoisson'
pes : <anonymous>: no visible global function definition for 'lm'
pes : <anonymous>: no visible binding for global variable 'logPle'
plot.cellsurvLQfit: no visible global function definition for 'par'
plot.cellsurvLQfit: no visible global function definition for 'curve'
plot.cellsurvLQfit: no visible global function definition for 'points'
plot.cellsurvLQfit: no visible global function definition for
'segments'
plotExp.cellsurvLQfit: no visible global function definition for 'par'
plotExp.cellsurvLQfit: no visible global function definition for 'glm'
plotExp.cellsurvLQfit: no visible global function definition for
'quasipoisson'
plotExp.cellsurvLQfit: no visible global function definition for
'segments'
plotExp.cellsurvLQfit: no visible global function definition for
'curve'
plotExp.cellsurvLQfit: no visible global function definition for
'legend'
plotExp.cellsurvLQfit: no visible global function definition for 'text'
plotExp.cellsurvLQfit: no visible global function definition for
'title'
plotExp.cellsurvLQfit: no visible global function definition for 'lm'
plotExp.cfa2way: no visible global function definition for 'par'
plotExp.cfa2way: no visible global function definition for 'barplot'
plotExp.cfa2way: no visible global function definition for 'points'
plotExp.cfa2way: no visible global function definition for 'segments'
plotExp.cfa2way: no visible global function definition for 'text'
plotExp.cfa2way: no visible global function definition for 'title'
plotExp.cfa2way: no visible global function definition for 'box'
sfpmean : sf.mean: no visible global function definition for 'glm'
sfpmean : sf.mean: no visible global function definition for
'quasipoisson'
sfpmean : sf.mean: no visible global function definition for 'poisson'
Undefined global functions or variables:
anova barplot box curve formula glm legend lm logPle par points
poisson quasipoisson segments text title
Consider adding
importFrom("graphics", "barplot", "box", "curve", "legend", "par",
"points", "segments", "text", "title")
importFrom("stats", "anova", "formula", "glm", "lm", "poisson",
"quasipoisson")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.13-bioc/meat/CFAssay.Rcheck/00check.log'
for details.
CFAssay.Rcheck/00install.out
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CFAssay_1.26.0.tar.gz && rm -rf CFAssay.buildbin-libdir && mkdir CFAssay.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CFAssay.buildbin-libdir CFAssay_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CFAssay_1.26.0.zip && rm CFAssay_1.26.0.tar.gz CFAssay_1.26.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 19179 100 19179 0 0 161k 0 --:--:-- --:--:-- --:--:-- 162k
install for i386
* installing *source* package 'CFAssay' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CFAssay'
finding HTML links ... done
cellsurvLQdiff html
cellsurvLQfit html
cfa2way html
pes html
plot.cellsurvLQfit html
plotExp html
plotExp.cellsurvLQfit html
plotExp.cfa2way html
plotExp.default html
print.cellsurvLQdiff html
print.cellsurvLQfit html
print.cfa2way html
sfpmean html
** building package indices
** installing vignettes
'cfassay.Rnw' using 'UTF-8'
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CFAssay' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CFAssay' as CFAssay_1.26.0.zip
* DONE (CFAssay)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'CFAssay' successfully unpacked and MD5 sums checked
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CFAssay.Rcheck/examples_i386/CFAssay-Ex.timings
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CFAssay.Rcheck/examples_x64/CFAssay-Ex.timings
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