Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:59 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the CAGEr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CAGEr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 231/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CAGEr 1.34.0 (landing page) Charles Plessy
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: CAGEr |
Version: 1.34.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CAGEr_1.34.0.tar.gz && rm -rf CAGEr.buildbin-libdir && mkdir CAGEr.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAGEr.buildbin-libdir CAGEr_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CAGEr_1.34.0.zip && rm CAGEr_1.34.0.tar.gz CAGEr_1.34.0.zip |
StartedAt: 2021-10-14 10:28:39 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 10:30:25 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 105.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CAGEr_1.34.0.tar.gz && rm -rf CAGEr.buildbin-libdir && mkdir CAGEr.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAGEr.buildbin-libdir CAGEr_1.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CAGEr_1.34.0.zip && rm CAGEr_1.34.0.tar.gz CAGEr_1.34.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 773k 100 773k 0 0 1499k 0 --:--:-- --:--:-- --:--:-- 1501k install for i386 * installing *source* package 'CAGEr' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'CAGEr' finding HTML links ... done CAGEexp-class html finding level-2 HTML links ... done CAGEr-class html CAGEr-package html CAGEr_Multicore html CAGEset-class html CTSS-class html CTSSclusteringMethod html CTSScoordinates html CTSScumulativesTagClusters html CTSSnormalizedTpm html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/CAGEr.buildbin-libdir/00LOCK-CAGEr/00new/CAGEr/help/CTSSnormalizedTpmDF.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/CAGEr.buildbin-libdir/00LOCK-CAGEr/00new/CAGEr/help/CTSSnormalizedTpmDF+2CCAGEset-method.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/CAGEr.buildbin-libdir/00LOCK-CAGEr/00new/CAGEr/help/CTSSnormalizedTpmDF+2CCAGEexp-method.html CTSStagCount html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/CAGEr.buildbin-libdir/00LOCK-CAGEr/00new/CAGEr/help/CTSStagCountDF.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/CAGEr.buildbin-libdir/00LOCK-CAGEr/00new/CAGEr/help/CTSStagCountDF+2CCAGEset-method.html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/CAGEr.buildbin-libdir/00LOCK-CAGEr/00new/CAGEr/help/CTSStagCountDF+2CCAGEexp-method.html CTSStagCountTable html CTSStoGenes html CustomConsensusClusters html Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp6fr891/R.INSTALL244462ae4867/CAGEr/man/CustomConsensusClusters.Rd:42: missing link '.ConsensusClusters' FANTOM5humanSamples html FANTOM5mouseSamples html GeneExpDESeq2 html GeneExpSE html QuantileWidthFunctions html aggregateTagClusters html annotateCTSS html bam2CTSS html byCtss html clusterAggregateAndSum html clusterCTSS html Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp6fr891/R.INSTALL244462ae4867/CAGEr/man/clusterCTSS.Rd:89: missing link 'TagClusters' coerceInBSgenome html consensusClusterConvertors html consensusClusters-set html consensusClusters html Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp6fr891/R.INSTALL244462ae4867/CAGEr/man/consensusClusters.Rd:52: missing link 'ConsensusClusters' consensusClustersDESeq2 html consensusClustersQuantile html consensusClustersTpm html coverage-functions html cumulativeCTSSdistribution html distclu-functions html exampleCAGEexp html exampleCAGEset html exampleZv9_annot html exportCTSStoBedGraph html exportToBed html expressionClasses html extractExpressionClass html genomeName html getCTSS html getExpressionProfiles html getShiftingPromoters html hanabi-class html hanabi html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/CAGEr.buildbin-libdir/00LOCK-CAGEr/00new/CAGEr/help/hanabi+2Clist-method.html hanabiPlot html import.CAGEscanMolecule html import.CTSS html import.bam html import.bam.ctss html import.bedCTSS html import.bedScore html import.bedmolecule html importPublicData html inputFiles html inputFilesType html librarySizes html loadFileIntoGPos html mapStats html mapStatsScopes html mergeCAGEsets html mergeSamples html moleculesGR2CTSS html normalizeTagCount html parseCAGEscanBlocksToGrangeTSS html plot.hanabi html plotAnnot html plotCorrelation html plotExpressionProfiles html plotInterquantileWidth html plotReverseCumulatives html powerLaw html quantilePositions html ranges2annot html ranges2genes html ranges2names html sampleLabels html scoreShift html seqNameTotalsSE html setColors html show-methods html strandInvaders html summariseChrExpr html tagClusterConvertors html tagClusters html Rd warning: C:/Users/biocbuild/bbs-3.13-bioc/tmpdir/Rtmp6fr891/R.INSTALL244462ae4867/CAGEr/man/tagClusters.Rd:58: missing link 'TagClusters' tagClustersQuantile html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'CAGEr' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'CAGEr' as CAGEr_1.34.0.zip * DONE (CAGEr) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'CAGEr' successfully unpacked and MD5 sums checked