Malte Thodberg
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/CAGEfightR |
| git_branch: RELEASE_3_13 |
| git_last_commit: f776ea4 |
| git_last_commit_date: 2021-05-19 12:35:42 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:59 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the CAGEfightR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CAGEfightR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 230/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CAGEfightR 1.12.0 (landing page) Malte Thodberg
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: CAGEfightR |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CAGEfightR_1.12.0.tar.gz && rm -rf CAGEfightR.buildbin-libdir && mkdir CAGEfightR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAGEfightR.buildbin-libdir CAGEfightR_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CAGEfightR_1.12.0.zip && rm CAGEfightR_1.12.0.tar.gz CAGEfightR_1.12.0.zip |
| StartedAt: 2021-10-14 10:56:13 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:57:47 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 93.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/CAGEfightR_1.12.0.tar.gz && rm -rf CAGEfightR.buildbin-libdir && mkdir CAGEfightR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CAGEfightR.buildbin-libdir CAGEfightR_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL CAGEfightR_1.12.0.zip && rm CAGEfightR_1.12.0.tar.gz CAGEfightR_1.12.0.zip
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install for i386
* installing *source* package 'CAGEfightR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'CAGEfightR'
finding HTML links ... done
assignGeneID html
assignMissingID html
assignTxID html
assignTxType html
balanceBC html
balanceD html
bwCommonGenome html
bwGenomeCompatibility html
bwValid html
calcBidirectionality html
calcComposition html
calcPooled html
calcShape html
calcSupport html
calcTPM html
calcTotalTags html
checkCTSSs html
checkPeaked html
checkPooled html
clusterBidirectionally html
clusterUnidirectionally html
combineClusters html
convertBAM2BigWig html
convertBED2BigWig html
convertGRanges2GPos html
exampleDesign html
findLinks html
findStretches html
quantifyCTSSs html
quantifyCTSSs2 html
quantifyClusters html
quantifyGenes html
quickEnhancers html
quickGenes html
quickTSSs html
shapeEntropy html
shapeIQR html
shapeMean html
shapeMultimodality html
subsetByBidirectionality html
subsetByComposition html
subsetBySupport html
swapRanges html
swapScores html
trackBalance html
trackCTSS html
trackClusters html
trackLinks html
trimToPeak html
trimToPercentiles html
tuneTagClustering html
utilsAggregateRows html
utilsDeStrand html
utilsScoreOverlaps html
utilsSimplifyTxDb html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'CAGEfightR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CAGEfightR' as CAGEfightR_1.12.0.zip
* DONE (CAGEfightR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'CAGEfightR' successfully unpacked and MD5 sums checked