| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:59 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the BufferedMatrixMethods package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BufferedMatrixMethods.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 221/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BufferedMatrixMethods 1.56.0 (landing page) Ben Bolstad
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: BufferedMatrixMethods |
| Version: 1.56.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/BufferedMatrixMethods_1.56.0.tar.gz && rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL BufferedMatrixMethods_1.56.0.zip && rm BufferedMatrixMethods_1.56.0.tar.gz BufferedMatrixMethods_1.56.0.zip |
| StartedAt: 2021-10-14 06:58:12 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 06:59:22 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 69.4 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/BufferedMatrixMethods_1.56.0.tar.gz && rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.56.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL BufferedMatrixMethods_1.56.0.zip && rm BufferedMatrixMethods_1.56.0.tar.gz BufferedMatrixMethods_1.56.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 11101 100 11101 0 0 133k 0 --:--:-- --:--:-- --:--:-- 135k
install for i386
* installing *source* package 'BufferedMatrixMethods' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BufferedMatrix/include' -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init_package.c -o init_package.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BufferedMatrix/include' -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:344:7: warning: unused variable 'i' [-Wunused-variable]
int i,j;
^
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:378:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^~~~~~~~~~~~
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:593:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^~~~~~~~~~~~
preprocess_bm.c: In function 'do_RMA_buffmat':
preprocess_bm.c:924:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
int first_ind;
^~~~~~~~~
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1151:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^~~~~~~~~~~~
At top level:
preprocess_bm.c:453:12: warning: 'min' defined but not used [-Wunused-function]
static int min(int x1,int x2){
^~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o BufferedMatrixMethods.dll tmp.def init_package.o preprocess_bm.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/BufferedMatrixMethods.buildbin-libdir/00LOCK-BufferedMatrixMethods/00new/BufferedMatrixMethods/libs/i386
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'BufferedMatrixMethods'
finding HTML links ... done
BM_affyDataInput html
BM_justRMA html
BM_readcelfiles html
rmapreprocess.bufferedmatrix html
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BufferedMatrixMethods' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BufferedMatrix/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c init_package.c -o init_package.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/BufferedMatrix/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function 'bm_rma_bg_correct':
preprocess_bm.c:344:7: warning: unused variable 'i' [-Wunused-variable]
int i,j;
^
preprocess_bm.c: In function 'R_bm_rma_bg_correct':
preprocess_bm.c:378:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^~~~~~~~~~~~
preprocess_bm.c: In function 'R_bm_quantile_normalize':
preprocess_bm.c:593:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^~~~~~~~~~~~
preprocess_bm.c: In function 'do_RMA_buffmat':
preprocess_bm.c:924:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
int first_ind;
^~~~~~~~~
preprocess_bm.c: In function 'R_bm_rma_bg_correct_quantile_normalize':
preprocess_bm.c:1151:7: warning: unused variable 'current_mode' [-Wunused-variable]
int current_mode;
^~~~~~~~~~~~
At top level:
preprocess_bm.c:453:12: warning: 'min' defined but not used [-Wunused-function]
static int min(int x1,int x2){
^~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o BufferedMatrixMethods.dll tmp.def init_package.o preprocess_bm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BufferedMatrixMethods' as BufferedMatrixMethods_1.56.0.zip
* DONE (BufferedMatrixMethods)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'BufferedMatrixMethods' successfully unpacked and MD5 sums checked