Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:35 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the AnnotationFuncs package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnnotationFuncs.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 65/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Stefan McKinnon Edwards
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
Package: AnnotationFuncs |
Version: 1.42.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationFuncs |
StartedAt: 2021-10-14 06:41:55 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 06:42:10 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 14.9 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data AnnotationFuncs ### ############################################################################## ############################################################################## * checking for file ‘AnnotationFuncs/DESCRIPTION’ ... OK * preparing ‘AnnotationFuncs’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘AnnotationFuncsUserguide.Rnw’ using Sweave Loading required package: AnnotationDbi Loading required package: stats4 Loading required package: BiocGenerics Loading required package: parallel Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:parallel’: clusterApply, clusterApplyLB, clusterCall, clusterEvalQ, clusterExport, clusterMap, parApply, parCapply, parLapply, parLapplyLB, parRapply, parSapply, parSapplyLB The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: Biobase Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: IRanges Loading required package: S4Vectors Attaching package: ‘S4Vectors’ The following objects are masked from ‘package:base’: I, expand.grid, unname Warning: Package 'AnnotationFuncs' is deprecated and will be removed from Bioconductor version 3.14 Warning in translate(symbols, from = org.Bt.egSYMBOL2EG, to = org.Hs.egGENENAME) : TAXID for 'to' and 'from' does not match! We found: From: Bos taurus To: Homo sapiens For cross species (ie. homologes) look at e.g. hom.Hs.inp.db. Error: processing vignette 'AnnotationFuncsUserguide.Rnw' failed with diagnostics: chunk 14 Error in library(hom.Hs.inp.db) : there is no package called ‘hom.Hs.inp.db’ --- failed re-building ‘AnnotationFuncsUserguide.Rnw’ SUMMARY: processing the following file failed: ‘AnnotationFuncsUserguide.Rnw’ Error: Vignette re-building failed. Execution halted