Luis Fernandez
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/AlpsNMR |
| git_branch: RELEASE_3_13 |
| git_last_commit: 92db448 |
| git_last_commit_date: 2021-09-16 08:28:27 -0400 (Thu, 16 Sep 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:57 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the AlpsNMR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AlpsNMR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 48/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AlpsNMR 3.2.3 (landing page) Luis Fernandez
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: AlpsNMR |
| Version: 3.2.3 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/AlpsNMR_3.2.3.tar.gz && rm -rf AlpsNMR.buildbin-libdir && mkdir AlpsNMR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AlpsNMR.buildbin-libdir AlpsNMR_3.2.3.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL AlpsNMR_3.2.3.zip && rm AlpsNMR_3.2.3.tar.gz AlpsNMR_3.2.3.zip |
| StartedAt: 2021-10-14 09:54:04 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:55:59 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 114.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/AlpsNMR_3.2.3.tar.gz && rm -rf AlpsNMR.buildbin-libdir && mkdir AlpsNMR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AlpsNMR.buildbin-libdir AlpsNMR_3.2.3.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL AlpsNMR_3.2.3.zip && rm AlpsNMR_3.2.3.tar.gz AlpsNMR_3.2.3.zip
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install for i386
* installing *source* package 'AlpsNMR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'AlpsNMR'
finding HTML links ... done
AUC_model html
AlpsNMR-package html
HMDB_blood html
HMDB_cell html
HMDB_urine html
MUVR_model_plot html
Parameters_blood html
Parameters_cell html
Parameters_urine html
Peak_detection html
Pipelines html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/AlpsNMR.buildbin-libdir/00LOCK-AlpsNMR/00new/AlpsNMR/help/pipe_normalization.html
ROI_blood html
ROI_cell html
ROI_urine html
SummarizedExperiment_to_nmr_data_1r html
SummarizedExperiment_to_nmr_dataset_peak_table
html
bp_VIP_analysis html
bp_kfold_VIP_analysis html
computes_peak_width_ppm html
confusion_matrix html
file_lister html
files_to_rDolphin html
filter.nmr_dataset_family html
finding level-2 HTML links ... done
format.nmr_dataset html
format.nmr_dataset_1D html
format.nmr_dataset_peak_table html
hmdb html
is.nmr_dataset html
is.nmr_dataset_1D html
is.nmr_dataset_peak_table html
load_and_save_functions html
model_VIP html
models_stability_plot_bootstrap html
models_stability_plot_plsda html
new_nmr_dataset html
new_nmr_dataset_1D html
new_nmr_dataset_peak_table html
nmr_align_find_ref html
nmr_baseline_removal html
nmr_baseline_threshold html
nmr_batman html
nmr_batman_options html
nmr_data html
nmr_data_1r_to_SummarizedExperiment html
nmr_data_analysis html
nmr_data_analysis_method html
nmr_dataset html
nmr_dataset_1D html
nmr_dataset_family html
nmr_dataset_peak_table html
nmr_dataset_peak_table_to_SummarizedExperiment
html
nmr_diagnose-defunct html
nmr_exclude_region html
nmr_export_data_1r html
nmr_identify_regions_blood html
nmr_identify_regions_cell html
nmr_identify_regions_urine html
nmr_integrate_regions html
nmr_interpolate_1D html
nmr_meta_add html
nmr_meta_export html
nmr_meta_get html
nmr_meta_get_column html
nmr_normalize html
nmr_pca_build_model html
nmr_pca_outliers html
nmr_pca_outliers_filter html
nmr_pca_outliers_plot html
nmr_pca_outliers_robust html
nmr_pca_plots html
nmr_ppm_resolution html
nmr_read_bruker_fid html
nmr_read_samples html
nmr_zip_bruker_samples html
p_value_perm html
permutation_test_model html
permutation_test_plot html
plot.nmr_dataset_1D html
plot_bootstrap_multimodel html
plot_interactive html
plot_plsda_multimodel html
plot_plsda_samples html
plot_vip_scores html
plot_webgl html
plsda_auroc_vip_compare html
plsda_auroc_vip_method html
ppm_VIP_vector html
ppm_resolution html
print.nmr_dataset html
print.nmr_dataset_1D html
print.nmr_dataset_peak_table html
random_subsampling html
rdCV_PLS_RF html
rdCV_PLS_RF_ML html
read_bruker_sample html
regions_from_peak_table html
save_files_to_rDolphin html
save_profiling_output html
sub-.nmr_dataset html
sub-.nmr_dataset_1D html
sub-.nmr_dataset_peak_table html
to_ChemoSpec html
validate_nmr_dataset html
validate_nmr_dataset_family html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'AlpsNMR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AlpsNMR' as AlpsNMR_3.2.3.zip
* DONE (AlpsNMR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'AlpsNMR' successfully unpacked and MD5 sums checked