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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AffyExpress
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* checking for file ‘AffyExpress/DESCRIPTION’ ... OK
* preparing ‘AffyExpress’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘AffyExpress.Rnw’ using Sweave
Loading required package: affy
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:parallel’:

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: limma

Attaching package: ‘limma’

The following object is masked from ‘package:BiocGenerics’:

    plotMA

Warning: Package 'AffyExpress' is deprecated and will be removed from
  Bioconductor version 3.14

Attaching package: ‘AffyExpress’

The following object is masked from ‘package:BiocGenerics’:

    Filter

The following object is masked from ‘package:base’:

    Filter

Loading required package: R2HTML
Loading required package: affyPLM
Loading required package: gcrma
Loading required package: preprocessCore
Loading required package: simpleaffy
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘simpleaffy’

Error: processing vignette 'AffyExpress.Rnw' failed with diagnostics:
 chunk 2 
Error in setQCEnvironment(genome) : 
  could not find function "setQCEnvironment"

--- failed re-building ‘AffyExpress.Rnw’

SUMMARY: processing the following file failed:
  ‘AffyExpress.Rnw’

Error: Vignette re-building failed.
Execution halted