Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:57 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the AffyCompatible package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AffyCompatible.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 25/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
AffyCompatible 1.52.0 (landing page) Martin Morgan
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: AffyCompatible |
Version: 1.52.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AffyCompatible.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings AffyCompatible_1.52.0.tar.gz |
StartedAt: 2021-10-14 19:22:19 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 19:25:07 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 167.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: AffyCompatible.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:AffyCompatible.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings AffyCompatible_1.52.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/AffyCompatible.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'AffyCompatible/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'AffyCompatible' version '1.52.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'AffyCompatible' can be installed ... OK * checking installed package size ... NOTE installed size is 7.2Mb sub-directories of 1Mb or more: R 2.2Mb help 4.0Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking R/sysdata.rda ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed NetAffxResource-class 5.89 0.33 9.1 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed NetAffxResource-class 5.97 0.22 9.3 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/AffyCompatible.Rcheck/00check.log' for details.
AffyCompatible.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/AffyCompatible_1.52.0.tar.gz && rm -rf AffyCompatible.buildbin-libdir && mkdir AffyCompatible.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=AffyCompatible.buildbin-libdir AffyCompatible_1.52.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL AffyCompatible_1.52.0.zip && rm AffyCompatible_1.52.0.tar.gz AffyCompatible_1.52.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 74292 100 74292 0 0 468k 0 --:--:-- --:--:-- --:--:-- 471k install for i386 * installing *source* package 'AffyCompatible' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'AffyCompatible' finding HTML links ... done AffyCompatible-class html AffyCompatible-package html NetAffxResource-class html NetAffxResource html accessors-NetAffxResource html readArr html readMage html readNetAffx html readXml html xclass html zzz-.TypedAssociation-class html zzz-ARRCompatibility-class html zzz-DTTCompatibility-class html zzz-NetAffxCompatibility-class html zzz html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'AffyCompatible' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'AffyCompatible' as AffyCompatible_1.52.0.zip * DONE (AffyCompatible) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'AffyCompatible' successfully unpacked and MD5 sums checked
AffyCompatible.Rcheck/examples_i386/AffyCompatible-Ex.timings
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AffyCompatible.Rcheck/examples_x64/AffyCompatible-Ex.timings
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