Estefania Mancini
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/ASpli |
| git_branch: RELEASE_3_13 |
| git_last_commit: 6dddfb0 |
| git_last_commit_date: 2021-05-19 12:22:07 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:57 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the ASpli package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ASpli.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 94/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ASpli 2.2.0 (landing page) Estefania Mancini
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: ASpli |
| Version: 2.2.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpli.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ASpli_2.2.0.tar.gz |
| StartedAt: 2021-10-14 19:41:09 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 20:08:56 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 1667.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ASpli.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASpli.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ASpli_2.2.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/ASpli.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASpli/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ASpli' version '2.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASpli' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ASpli-package 117.00 0.98 118.08
jCounts-methods 61.74 0.00 61.74
exportSplicingReports 61.22 0.15 61.39
exportIntegratedSignals 61.09 0.07 63.34
integrateSignals 60.84 0.00 60.84
splicingReport 59.62 0.02 59.65
jDUreport 56.23 0.03 56.34
gbCounts 51.55 0.05 51.60
gbDUreport-method 51.42 0.00 51.42
** running examples for arch 'x64' ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ASpli-package 128.19 0.14 128.33
exportIntegratedSignals 69.67 0.13 69.80
splicingReport 69.04 0.03 69.07
exportSplicingReports 68.00 0.17 68.17
integrateSignals 66.75 0.00 66.75
jCounts-methods 66.04 0.00 66.05
jDUreport 65.10 0.06 65.16
gbCounts 58.52 0.02 58.53
gbDUreport-method 57.25 0.00 57.29
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ASpli.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ASpli_2.2.0.tar.gz && rm -rf ASpli.buildbin-libdir && mkdir ASpli.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ASpli.buildbin-libdir ASpli_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ASpli_2.2.0.zip && rm ASpli_2.2.0.tar.gz ASpli_2.2.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
7 4895k 7 361k 0 0 1048k 0 0:00:04 --:--:-- 0:00:04 1050k
54 4895k 54 2659k 0 0 1972k 0 0:00:02 0:00:01 0:00:01 1972k
100 4895k 100 4895k 0 0 2205k 0 0:00:02 0:00:02 --:--:-- 2206k
install for i386
* installing *source* package 'ASpli' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ASpli'
finding HTML links ... done
ASpli-deprecated html
ASpli-package html
ASpliAS-class html
ASpliCounts-class html
ASpliCounts html
ASpliDU-class html
ASpliFeatures-class html
ASpliIntegratedSignals-class html
ASpliJDU-class html
ASpliSplicingReport-class html
DUreport html
finding level-2 HTML links ... done
DUreport.norm html
DUreport.offset html
DUreportBinSplice-method html
acc_AS html
acc_DU html
acc_JDU html
acc_MergedReport html
acc_counts html
acc_features html
acc_is html
binGenome-methods html
binGenome html
containsJunctions-function html
example_data html
exportIntegratedSignals html
exportSplicingReports html
filterDU-method html
filterSignals html
gbCounts html
gbDUreport-method html
getConditions-function html
integrateSignals html
jCounts-methods html
jDUreport html
junctionDUreport html
loadBAM html
mergeBinDUAS-method html
plotBins html
plotGenomicRegions html
rds html
show-methods html
splicingReport html
subset-methods html
write-methods html
write html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ASpli' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASpli' as ASpli_2.2.0.zip
* DONE (ASpli)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'ASpli' successfully unpacked and MD5 sums checked
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ASpli.Rcheck/examples_i386/ASpli-Ex.timings
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ASpli.Rcheck/examples_x64/ASpli-Ex.timings
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