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This page was generated on 2021-10-15 15:06:27 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the ACME package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ACME.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 14/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ACME 2.48.0 (landing page) Sean Davis
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: ACME |
Version: 2.48.0 |
Command: rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ACME_2.48.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ACME.buildbin-libdir |
StartedAt: 2021-10-15 01:30:38 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 01:31:04 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 26.1 seconds |
RetCode: 0 |
Status: OK |
PackageFile: ACME_2.48.0.tgz |
PackageFileSize: 10.08 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ACME_2.48.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R ACME.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ACME.buildbin-libdir ACME_2.48.0.tar.gz' >>>>>>> * installing *source* package ‘ACME’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c windowChisq.c -o windowChisq.o windowChisq.c:57:71: warning: & has lower precedence than >; > will be evaluated first [-Wparentheses] while((xlocations[i]-xlocations[firstprobe-1] < (halfWindowSize)) & ^ windowChisq.c:57:71: note: place parentheses around the '>' expression to silence this warning while((xlocations[i]-xlocations[firstprobe-1] < (halfWindowSize)) & ^ windowChisq.c:57:71: note: place parentheses around the & expression to evaluate it first while((xlocations[i]-xlocations[firstprobe-1] < (halfWindowSize)) & ^ ( windowChisq.c:62:70: warning: & has lower precedence than <; < will be evaluated first [-Wparentheses] while((xlocations[lastprobe+1]-xlocations[i] < (halfWindowSize)) & ^ windowChisq.c:62:70: note: place parentheses around the '<' expression to silence this warning while((xlocations[lastprobe+1]-xlocations[i] < (halfWindowSize)) & ^ windowChisq.c:62:70: note: place parentheses around the & expression to evaluate it first while((xlocations[lastprobe+1]-xlocations[i] < (halfWindowSize)) & ^ ( windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable] double *xa,*xlocations,*xchivals; ^ windowChisq.c:86:20: warning: incompatible function pointer types initializing 'DL_FUNC' (aka 'void *(*)()') with an expression of type 'SEXP (*)(SEXP, SEXP, SEXP, SEXP, SEXP)' (aka 'struct SEXPREC *(*)(struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *, struct SEXPREC *)') [-Wincompatible-function-pointer-types] {"windowChisq",&windowChisq,5}, ^~~~~~~~~~~~ 4 warnings generated. clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o ACME.so windowChisq.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.13-bioc/meat/ACME.buildbin-libdir/00LOCK-ACME/00new/ACME/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ACME) >>>>>>> >>>>>>> FIXING LINKS FOR ACME.buildbin-libdir/ACME/libs/ACME.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "ACME.buildbin-libdir/ACME/libs/ACME.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "ACME.buildbin-libdir/ACME/libs/ACME.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "ACME.buildbin-libdir/ACME/libs/ACME.so"